CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029584_P001	Maize	nucleus	73.91	85.96
TraesCS2D01G088100.1	Wheat	nucleus	60.87	64.29
TraesCS2A01G090200.1	Wheat	nucleus	60.87	64.29
TraesCS2B01G105900.1	Wheat	nucleus	61.84	64.0
Os03t0437100-01	Rice	nucleus	57.97	60.0
Os11t0340477-01	Rice	nucleus	57.97	60.0
HORVU2Hr1G014870.1	Barley	nucleus	59.42	56.94
HORVU3Hr1G028100.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.93	46.73
EER97472	Sorghum	nucleus	42.51	44.67
EER92088	Sorghum	nucleus	48.79	42.8
EER92087	Sorghum	nucleus	46.86	37.89
EER90834	Sorghum	nucleus	34.3	24.4
EES16240	Sorghum	nucleus	31.88	22.76
OQU90180	Sorghum	nucleus, plastid	25.6	22.18
CDY70162	Canola	nucleus	19.32	18.69
Bra029315.1-P	Field mustard	nucleus	19.32	17.17
CDY42873	Canola	nucleus	19.81	16.47
Bra012953.1-P	Field mustard	plastid	18.84	14.18
CDY02142	Canola	nucleus	18.36	13.97
CDY23066	Canola	plastid	18.36	13.82
EES11238	Sorghum	mitochondrion	22.22	13.81
OQU85696	Sorghum	mitochondrion	22.22	13.65
AT5G61470.1	Thale cress	nucleus	17.39	11.84
EER91950	Sorghum	mitochondrion, plastid	21.26	11.4

Protein Annotations

MapMan:15.5.15	EntrezGene:8063219	UniProt:C5WVM1	EnsemblPlants:EER92089	ProteinID:EER92089	ProteinID:EER92089.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:IPR013087	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374
PANTHER:PTHR26374:SF178	SMART:SM00355	EnsemblPlantsGene:SORBI_3001G330400	SUPFAM:SSF57667	unigene:Sbi.11711	UniParc:UPI0001A81FF5
RefSeq:XP_002465091.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:61788241..61789215

Molecular Weight (calculated)

21042.6 Da

IEP (calculated)

9.165

GRAVY (calculated)

-0.153

Length

207 amino acids

Sequence
(BLAST)

001: MAITHDDYVS LCLMALAAAG GGGQAAGLTT QYALTNTAAC WTATAQESEL RFRCSVCGKA FASHQALGGH KASHRKPTPV LQAQASSSSA GGAAASSSGI
101: TTSAGGSSGQ GRHRCTVCHR SFATGQALGG HKRCHYWDGL SVSLTASSAP SGSGSTVKGF DLNLVPAPAA TAANAATRWR EEEEVQSPLP VKKRRLSGPS
201: LDLSLTI

Best Arabidopsis Sequence Match ( AT5G04340.1 )
(BLAST)

001: MALETLTSPR LSSPMPTLFQ DSALGFHGSK GKRSKRSRSE FDRQSLTEDE YIALCLMLLA RDGDRNRDLD LPSSSSSPPL LPPLPTPIYK CSVCDKAFSS
101: YQALGGHKAS HRKSFSLTQS AGGDELSTSS AITTSGISGG GGGSVKSHVC SICHKSFATG QALGGHKRCH YEGKNGGGVS SSVSNSEDVG STSHVSSGHR
201: GFDLNIPPIP EFSMVNGDEE VMSPMPAKKL RFDFPEKP

Arabidopsis Description

ZAT6Zinc finger protein ZAT6 [Source:UniProtKB/Swiss-Prot;Acc:O22533]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.