CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021992_P001	Maize	nucleus	66.95	73.06
Zm00001d021990_P001	Maize	nucleus	66.95	73.06
TraesCS2D01G193900.1	Wheat	nucleus	58.58	64.22
TraesCS2A01G193900.1	Wheat	nucleus	57.74	62.73
TraesCS2B01G212900.1	Wheat	nucleus	57.32	62.27
Zm00001d012094_P001	Maize	nucleus	29.71	51.45
Zm00001d020427_P001	Maize	nucleus	25.94	51.24
Zm00001d043882_P001	Maize	nucleus	49.79	50.64
Zm00001d006735_P001	Maize	nucleus	38.08	46.67
Zm00001d006736_P001	Maize	mitochondrion, nucleus, plastid	38.91	38.91
Zm00001d043884_P001	Maize	nucleus	28.03	34.01
EER92088	Sorghum	nucleus	28.45	28.81
EER97472	Sorghum	nucleus	23.01	27.92
EER90834	Sorghum	nucleus	33.47	27.49
EER92087	Sorghum	nucleus	29.29	27.34
EES16240	Sorghum	nucleus	33.05	27.24
EER92089	Sorghum	nucleus	22.18	25.6
EES11238	Sorghum	mitochondrion	29.29	21.02
OQU85696	Sorghum	mitochondrion	25.94	18.4
EER91950	Sorghum	mitochondrion, plastid	28.03	17.36

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8058383	UniProt:A0A1W0W732	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	EnsemblPlants:OQU90180	ProteinID:OQU90180	ProteinID:OQU90180.1	PFAM:PF13912
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF328	SMART:SM00355	EnsemblPlantsGene:SORBI_3002G359300
SUPFAM:SSF57667	UniParc:UPI0001A8382E	RefSeq:XP_002460947.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:72161115..72162609

Molecular Weight (calculated)

24737.9 Da

IEP (calculated)

8.491

GRAVY (calculated)

-0.675

Length

239 amino acids

Sequence
(BLAST)

001: MALDAAIDVS SSKPPVPPPS PPRIDSWARG GRRSKRRAGS PASDGGSGGG DHDQSEQEYL ALCLLMLSRG LRGDDATDVG GGAAPTVAKT TQHHHQHGYE
101: CSVCGKVYPS YQALGGHKTS HRKPPTPPTP PPGDEASSGS GGAAHAEEKE KEKVHQCSLC LRTFPSGQAL GGHKRLHYEG GVGDGAKDKD KDAVTKANKA
201: SAAAAATTAV LRDFDLNLPA DGAPPEAKRA RTTTMLLVV

Best Arabidopsis Sequence Match ( AT3G49930.1 )
(BLAST)

001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL

Arabidopsis Description

At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.