Factsheet for Zm00001d006736_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020427_P001	Maize	nucleus	43.1	85.12
Zm00001d012094_P001	Maize	nucleus	40.17	69.57
Zm00001d006735_P001	Maize	nucleus	52.3	64.1
Zm00001d043882_P001	Maize	nucleus	47.28	48.09
OQU90180	Sorghum	nucleus, plastid	38.91	38.91
Zm00001d021992_P001	Maize	nucleus	34.31	37.44
Zm00001d021990_P001	Maize	nucleus	34.31	37.44
TraesCS2D01G193900.1	Wheat	nucleus	32.64	35.78
TraesCS2A01G193900.1	Wheat	nucleus	32.22	35.0
TraesCS2B01G212900.1	Wheat	nucleus	31.38	34.09
Zm00001d043884_P001	Maize	nucleus	21.34	25.89
Zm00001d047330_P001	Maize	nucleus	19.67	24.87
Zm00001d029584_P001	Maize	nucleus	18.41	24.72
Zm00001d029589_P001	Maize	nucleus	21.34	24.29
Zm00001d029586_P001	Maize	nucleus	22.59	23.18
Zm00001d047334_P001	Maize	nucleus	21.34	22.67
Zm00001d029587_P001	Maize	nucleus	23.01	22.18
Zm00001d022002_P001	Maize	nucleus	17.99	21.72
Zm00001d034145_P001	Maize	nucleus	24.69	21.22
Zm00001d013208_P001	Maize	nucleus	23.01	20.83
Zm00001d017695_P001	Maize	extracellular	11.72	20.14
Zm00001d030858_P001	Maize	nucleus	21.76	18.77
Zm00001d002731_P001	Maize	nucleus	20.08	15.64
Zm00001d047102_P001	Maize	nucleus	21.34	15.0
Zm00001d029917_P001	Maize	nucleus	20.08	14.08
Zm00001d051371_P001	Maize	mitochondrion	17.99	12.68
Zm00001d017497_P001	Maize	mitochondrion	13.39	10.13

Protein Annotations

EnsemblPlants:Zm00001d006736_P001	EnsemblPlants:Zm00001d006736_T001	EnsemblPlantsGene:Zm00001d006736	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF328
PFAM:PF13912	PFscan:PS50157	ProteinID:ONM24892.1	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI000843FE6B	UniProt:A0A1D6F042	MapMan:15.5.15	:	:

Description

Zinc finger protein AZF1

Coordinates

chr2:+:215595116..215596661

Molecular Weight (calculated)

26131.2 Da

IEP (calculated)

9.133

GRAVY (calculated)

-0.520

Length

239 amino acids

Sequence
(BLAST)

001: MIAVLRNFDW PSVRRRMPSS RHARAMLRVV WSGLRLPRYR PPQQPRESLH IPTCRVLISR VSNNQRLSMA LIKPPAATDD DQAEREYMAS CLIMLSRGLR
101: DDNAADATRA TGAAPTSANM ANEYKCSVCQ KVFTSYQALG GHKTRHRKPP AAAAPSDEAS TGGTAHEKLH QCSLCPRTFS SGQALGGHMT RHRKPPPPVV
201: VLDFDLNMLP AEAEAEATEP VAAPPDVKRA CTDDDAAGD

Best Arabidopsis Sequence Match ( AT3G49930.1 )
(BLAST)

001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL

Arabidopsis Description

At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.