Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022002_P001 | Maize | nucleus | 78.68 | 78.28 |
| Os07t0590100-01 | Rice | cytosol, nucleus | 50.76 | 49.51 |
| EER92089 | Sorghum | nucleus | 44.67 | 42.51 |
| EER92088 | Sorghum | nucleus | 43.65 | 36.44 |
| EER92087 | Sorghum | nucleus | 40.1 | 30.86 |
| EER90834 | Sorghum | nucleus | 35.53 | 24.05 |
| OQU90180 | Sorghum | nucleus, plastid | 27.92 | 23.01 |
| EES16240 | Sorghum | nucleus | 31.98 | 21.72 |
| CDY70162 | Canola | nucleus | 20.3 | 18.69 |
| Bra029315.1-P | Field mustard | nucleus | 19.29 | 16.31 |
| CDY42873 | Canola | nucleus | 19.8 | 15.66 |
| EES11238 | Sorghum | mitochondrion | 23.86 | 14.11 |
| Bra012953.1-P | Field mustard | plastid | 18.78 | 13.45 |
| CDY02142 | Canola | nucleus | 18.27 | 13.24 |
| CDY23066 | Canola | plastid | 18.27 | 13.09 |
| OQU85696 | Sorghum | mitochondrion | 21.83 | 12.76 |
| AT5G61470.1 | Thale cress | nucleus | 17.77 | 11.51 |
| EER91950 | Sorghum | mitochondrion, plastid | 22.34 | 11.4 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:8058384 | UniProt:C5XD49 | EnsemblPlants:EER97472 | ProteinID:EER97472 |
| ProteinID:EER97472.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 |
| PANTHER:PTHR26374 | PANTHER:PTHR26374:SF178 | SMART:SM00355 | EnsemblPlantsGene:SORBI_3002G360100 | SUPFAM:SSF57667 | SignalP:SignalP-noTM |
| UniParc:UPI0001A83832 | RefSeq:XP_002460951.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:+:72238481..72239359
Molecular Weight (calculated)
20428.8 Da
IEP (calculated)
8.818
GRAVY (calculated)
-0.401
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQDDYLSLC LAALVAACQQ AGAEDDDAAP LRARAASSEL PLALHYRCPI CGKAFASYQA LGGHKASHRK PAAAAYDGRA APSSSSSQHR QKGAAEASSS
101: SSGSGAGAGR HVCTVCHRYF ATGQALGGHK RFHYLHGPSV PASLPPSTAG AGWLDLNSTP LAQDDVPFAG VRRRGEDEEV QRSLPLQAKK HRASNAA
101: SSGSGAGAGR HVCTVCHRYF ATGQALGGHK RFHYLHGPSV PASLPPSTAG AGWLDLNSTP LAQDDVPFAG VRRRGEDEEV QRSLPLQAKK HRASNAA
001: MALETLNSPT ATTTARPLLR YREEMEPENL EQWAKRKRTK RQRFDHGHQN QETNKNLPSE EEYLALCLLM LARGSAVQSP PLPPLPSRAS PSDHRDYKCT
101: VCGKSFSSYQ ALGGHKTSHR KPTNTSITSG NQELSNNSHS NSGSVVINVT VNTGNGVSQS GKIHTCSICF KSFASGQALG GHKRCHYDGG NNGNGNGSSS
201: NSVELVAGSD VSDVDNERWS EESAIGGHRG FDLNLPADQV SVTTS
101: VCGKSFSSYQ ALGGHKTSHR KPTNTSITSG NQELSNNSHS NSGSVVINVT VNTGNGVSQS GKIHTCSICF KSFASGQALG GHKRCHYDGG NNGNGNGSSS
201: NSVELVAGSD VSDVDNERWS EESAIGGHRG FDLNLPADQV SVTTS
Arabidopsis Description
AZF1ZF1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTI6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.