Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029315.1-P | Field mustard | nucleus | 93.17 | 99.57 |
| CDY70162 | Canola | nucleus | 75.5 | 87.85 |
| CDY23066 | Canola | plastid | 62.65 | 56.73 |
| CDY02142 | Canola | nucleus | 61.45 | 56.25 |
| AT5G61470.1 | Thale cress | nucleus | 43.78 | 35.86 |
| CDY02102 | Canola | nucleus | 17.27 | 27.22 |
| CDY23027 | Canola | nucleus | 17.67 | 25.88 |
| CDY22361 | Canola | nucleus | 18.88 | 25.41 |
| CDX81313 | Canola | nucleus | 18.88 | 25.27 |
| CDY30794 | Canola | nucleus | 18.88 | 24.87 |
| CDX95629 | Canola | nucleus | 25.3 | 22.99 |
| CDY71582 | Canola | nucleus | 24.5 | 22.43 |
| CDY18661 | Canola | nucleus | 18.47 | 22.22 |
| CDY41155 | Canola | nucleus | 22.09 | 22.18 |
| CDY37027 | Canola | nucleus | 24.9 | 22.06 |
| CDY43576 | Canola | nucleus | 18.47 | 22.01 |
| CDX71799 | Canola | nucleus | 22.89 | 21.92 |
| Zm00001d029584_P001 | Maize | nucleus | 15.66 | 21.91 |
| CDY27394 | Canola | nucleus | 24.9 | 21.75 |
| CDX89061 | Canola | nucleus | 22.89 | 21.67 |
| CDX83402 | Canola | nucleus | 25.7 | 21.48 |
| CDY37851 | Canola | nucleus | 18.47 | 21.4 |
| CDX83103 | Canola | nucleus | 18.88 | 21.17 |
| Zm00001d047330_P001 | Maize | nucleus | 16.06 | 21.16 |
| CDX68559 | Canola | nucleus | 18.88 | 20.89 |
| CDX68558 | Canola | nucleus | 18.47 | 20.72 |
| CDY48363 | Canola | nucleus | 23.69 | 20.56 |
| CDY51312 | Canola | nucleus | 18.07 | 20.45 |
| CDX67836 | Canola | nucleus | 24.1 | 20.34 |
| TraesCS7D01G161800.1 | Wheat | nucleus | 16.87 | 20.19 |
| TraesCS2A01G090200.1 | Wheat | nucleus | 15.66 | 19.9 |
| EER92089 | Sorghum | nucleus | 16.47 | 19.81 |
| EER97472 | Sorghum | nucleus | 15.66 | 19.8 |
| TraesCS7A01G160700.2 | Wheat | nucleus | 16.87 | 19.53 |
| CDY36493 | Canola | nucleus | 18.88 | 19.5 |
| CDY08718 | Canola | nucleus | 18.88 | 19.5 |
| Os11t0340477-01 | Rice | nucleus | 15.66 | 19.5 |
| Os03t0437100-01 | Rice | nucleus | 15.66 | 19.5 |
| TraesCS2B01G105900.1 | Wheat | nucleus | 15.66 | 19.5 |
| CDY03945 | Canola | nucleus | 18.07 | 19.48 |
| TraesCS2D01G088100.1 | Wheat | nucleus | 15.26 | 19.39 |
| CDX90105 | Canola | nucleus | 18.07 | 19.31 |
| CDY11770 | Canola | nucleus | 18.07 | 19.31 |
| CDX70236 | Canola | nucleus, plastid | 17.67 | 19.3 |
| TraesCS7B01G065700.1 | Wheat | nucleus | 16.47 | 19.25 |
| CDX84907 | Canola | nucleus | 17.67 | 19.21 |
| CDY27629 | Canola | nucleus | 17.67 | 19.21 |
| Zm00001d022002_P001 | Maize | nucleus | 15.26 | 19.19 |
| Os07t0590100-01 | Rice | cytosol, nucleus | 14.86 | 18.32 |
| HORVU2Hr1G014870.1 | Barley | nucleus | 15.26 | 17.59 |
| EER92088 | Sorghum | nucleus | 16.47 | 17.37 |
| Zm00001d029586_P001 | Maize | nucleus | 16.06 | 17.17 |
| Zm00001d029589_P001 | Maize | nucleus | 14.46 | 17.14 |
| Zm00001d047334_P001 | Maize | nucleus | 15.26 | 16.89 |
| Zm00001d029587_P001 | Maize | nucleus | 16.47 | 16.53 |
| CDX95435 | Canola | nucleus | 17.27 | 16.48 |
| CDY42192 | Canola | nucleus | 17.27 | 16.29 |
| CDX99202 | Canola | nucleus | 17.27 | 16.17 |
| CDY46162 | Canola | nucleus | 17.27 | 16.1 |
| CDY65161 | Canola | nucleus | 16.87 | 15.67 |
| CDX82290 | Canola | nucleus | 16.87 | 15.61 |
| Os03t0437200-01 | Rice | cytosol, nucleus, vacuole | 13.65 | 15.45 |
| EER92087 | Sorghum | nucleus | 15.66 | 15.23 |
| CDY09671 | Canola | nucleus | 11.24 | 14.0 |
| CDY40527 | Canola | nucleus | 10.84 | 13.92 |
| CDY32274 | Canola | nucleus | 10.84 | 13.71 |
| CDY69391 | Canola | nucleus | 11.65 | 13.55 |
| CDY53641 | Canola | nucleus | 11.24 | 13.4 |
| CDY50848 | Canola | nucleus | 11.24 | 13.4 |
| HORVU3Hr1G028100.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 10.04 | 12.56 |
| CDY50966 | Canola | nucleus | 16.87 | 11.26 |
| CDY28108 | Canola | nucleus | 16.87 | 9.31 |
Protein Annotations
| EnsemblPlants:CDY42873 | EnsemblPlantsGene:GSBRNA2T00075571001 | Gene3D:3.30.160.60 | GO:A0A078I1A7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF322 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY42873 | ProteinID:CDY42873.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EEACFC | UniProt:A0A078I1A7 | MapMan:15.5.15 | : |
Description
BnaAnng06980DBnaAnng06980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1A7]
Coordinates
chrLK032536:-:225941..226690
Molecular Weight (calculated)
27605.9 Da
IEP (calculated)
4.767
GRAVY (calculated)
-0.954
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNKSFSNG STLREHMMSE SASGSTLPSL ETSNNETVLI GGPDLKREDG AHQIKGERKM IVDEADSTGS GSPLTAVEEA GLILVALSKG QRPENSQNWN
101: AIDRLLATPN GKEEYYETDL DSDDDNKEVK YKSVAELLTQ NVETLTEDNG EDDEDNDADE TNLVTREKKC KKEFICDVCG KVFGSYQALG GHRTSHKCKR
201: LKICDKNDQD RELVPNKKND QDRRHQCGVC GREFESGQAL GGHMKTHYI
101: AIDRLLATPN GKEEYYETDL DSDDDNKEVK YKSVAELLTQ NVETLTEDNG EDDEDNDADE TNLVTREKKC KKEFICDVCG KVFGSYQALG GHRTSHKCKR
201: LKICDKNDQD RELVPNKKND QDRRHQCGVC GREFESGQAL GGHMKTHYI
001: MYSLLKKTKI CQVCKKSFSN GKALGGHMRA HTLKFFPGSS SSTGSITPSL RSCNNLGASF RRPNETVLAR FVHTSEVVGG PKPDLNKEAE QRTTVKKKIV
101: VDLEEENSIE SESDITIEES ALCLLQMKDD NMSEYLQNLK SIDSLVSTRK RKDTENYIEI DSDENHEDSD DEYVVEDEDE DNEDDDVKSL TSDVENLIGD
201: SDEDDDDYGD ENAYYGGKRK RGKKQSKYTC DTCGKVLRSY QALGGHRTSH KYKRLKISDK NYFGEDGPIV RRQYECQICN RMFASGQALG GHKKIHYMFL
301: APAK
101: VDLEEENSIE SESDITIEES ALCLLQMKDD NMSEYLQNLK SIDSLVSTRK RKDTENYIEI DSDENHEDSD DEYVVEDEDE DNEDDDVKSL TSDVENLIGD
201: SDEDDDDYGD ENAYYGGKRK RGKKQSKYTC DTCGKVLRSY QALGGHRTSH KYKRLKISDK NYFGEDGPIV RRQYECQICN RMFASGQALG GHKKIHYMFL
301: APAK
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9FII6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.