Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42873 | Canola | nucleus | 99.57 | 93.17 |
| CDY70162 | Canola | nucleus | 80.26 | 87.38 |
| Bra012953.1-P | Field mustard | plastid | 62.66 | 53.09 |
| AT5G61470.1 | Thale cress | nucleus | 42.92 | 32.89 |
| Bra033666.1-P | Field mustard | nucleus | 18.45 | 23.24 |
| Zm00001d029584_P001 | Maize | nucleus | 16.31 | 21.35 |
| Zm00001d047330_P001 | Maize | nucleus | 16.74 | 20.63 |
| Bra012914.1-P | Field mustard | nucleus | 18.45 | 20.19 |
| Bra014483.1-P | Field mustard | nucleus | 21.46 | 19.61 |
| Bra029985.1-P | Field mustard | nucleus | 18.45 | 19.46 |
| TraesCS2A01G090200.1 | Wheat | nucleus | 16.31 | 19.39 |
| EER92089 | Sorghum | nucleus | 17.17 | 19.32 |
| EER97472 | Sorghum | nucleus | 16.31 | 19.29 |
| TraesCS7D01G161800.1 | Wheat | nucleus | 17.17 | 19.23 |
| Os03t0437100-01 | Rice | nucleus | 16.31 | 19.0 |
| Os11t0340477-01 | Rice | nucleus | 16.31 | 19.0 |
| TraesCS2D01G088100.1 | Wheat | nucleus | 15.88 | 18.88 |
| Zm00001d022002_P001 | Maize | nucleus | 15.88 | 18.69 |
| TraesCS7A01G160700.2 | Wheat | nucleus | 17.17 | 18.6 |
| TraesCS2B01G105900.1 | Wheat | nucleus | 15.88 | 18.5 |
| Bra032845.1-P | Field mustard | nucleus | 18.03 | 18.34 |
| TraesCS7B01G065700.1 | Wheat | nucleus | 16.74 | 18.31 |
| Bra037845.1-P | Field mustard | nucleus | 18.03 | 18.18 |
| Bra040325.1-P | Field mustard | nucleus | 21.89 | 18.15 |
| Bra010922.1-P | Field mustard | nucleus | 18.03 | 18.03 |
| Bra009464.1-P | Field mustard | plastid | 17.6 | 17.98 |
| Bra031834.1-P | Field mustard | nucleus | 18.03 | 17.87 |
| Bra024448.1-P | Field mustard | nucleus | 18.45 | 17.84 |
| Os07t0590100-01 | Rice | cytosol, nucleus | 15.45 | 17.82 |
| Bra003422.1-P | Field mustard | nucleus | 22.32 | 17.51 |
| Bra000372.1-P | Field mustard | mitochondrion, nucleus | 23.18 | 17.42 |
| HORVU2Hr1G014870.1 | Barley | nucleus | 15.88 | 17.13 |
| Bra007545.1-P | Field mustard | nucleus | 21.46 | 16.84 |
| Zm00001d029589_P001 | Maize | nucleus | 15.02 | 16.67 |
| EER92088 | Sorghum | nucleus | 16.74 | 16.53 |
| Zm00001d029586_P001 | Maize | nucleus | 16.31 | 16.31 |
| Zm00001d047334_P001 | Maize | nucleus | 15.02 | 15.56 |
| Bra038219.1-P | Field mustard | nucleus | 17.6 | 15.53 |
| Bra022436.1-P | Field mustard | nucleus | 17.6 | 15.36 |
| Zm00001d029587_P001 | Maize | nucleus | 16.31 | 15.32 |
| Bra001752.1-P | Field mustard | nucleus | 17.17 | 14.98 |
| Os03t0437200-01 | Rice | cytosol, nucleus, vacuole | 13.73 | 14.55 |
| EER92087 | Sorghum | nucleus | 15.45 | 14.06 |
| HORVU3Hr1G028100.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 10.3 | 12.06 |
| Bra018817.1-P | Field mustard | nucleus | 16.31 | 10.19 |
| Bra040741.1-P | Field mustard | nucleus | 7.73 | 8.61 |
| Bra012701.1-P | Field mustard | nucleus, plastid | 7.73 | 8.41 |
| Bra038491.1-P | Field mustard | nucleus | 9.44 | 5.66 |
Protein Annotations
| EnsemblPlants:Bra029315.1 | EnsemblPlants:Bra029315.1-P | EnsemblPlantsGene:Bra029315 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF322 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI00025459B7 | UniProt:M4EKJ8 | MapMan:15.5.15 | : | : | : |
Description
AT5G61470 (E=3e-027) | zinc finger (C2H2 type) family protein
Coordinates
chrA02:-:25905929..25906630
Molecular Weight (calculated)
25843.9 Da
IEP (calculated)
4.626
GRAVY (calculated)
-0.961
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSESASGST LPSLETSNNE TVLIGGPDLK REDGAHQIKG ERKMIVDEAD STGSGSPLTA VEEAGLILVA MSKGQRPENS QNWNAIDRLL ATPNGKEEYY
101: ETDLDSDDDN KEVKYKSVAE LLTQNVETLT EDNGEDDEDN DADETNLVTR EKKCKKEFIC DVCGKVFGSY QALGGHRTSH KCKRLKICDK NDQDRELVPN
201: KKNDQDRRHQ CGVCGREFES GQALGGHMKT HYI
101: ETDLDSDDDN KEVKYKSVAE LLTQNVETLT EDNGEDDEDN DADETNLVTR EKKCKKEFIC DVCGKVFGSY QALGGHRTSH KCKRLKICDK NDQDRELVPN
201: KKNDQDRRHQ CGVCGREFES GQALGGHMKT HYI
001: MYSLLKKTKI CQVCKKSFSN GKALGGHMRA HTLKFFPGSS SSTGSITPSL RSCNNLGASF RRPNETVLAR FVHTSEVVGG PKPDLNKEAE QRTTVKKKIV
101: VDLEEENSIE SESDITIEES ALCLLQMKDD NMSEYLQNLK SIDSLVSTRK RKDTENYIEI DSDENHEDSD DEYVVEDEDE DNEDDDVKSL TSDVENLIGD
201: SDEDDDDYGD ENAYYGGKRK RGKKQSKYTC DTCGKVLRSY QALGGHRTSH KYKRLKISDK NYFGEDGPIV RRQYECQICN RMFASGQALG GHKKIHYMFL
301: APAK
101: VDLEEENSIE SESDITIEES ALCLLQMKDD NMSEYLQNLK SIDSLVSTRK RKDTENYIEI DSDENHEDSD DEYVVEDEDE DNEDDDVKSL TSDVENLIGD
201: SDEDDDDYGD ENAYYGGKRK RGKKQSKYTC DTCGKVLRSY QALGGHRTSH KYKRLKISDK NYFGEDGPIV RRQYECQICN RMFASGQALG GHKKIHYMFL
301: APAK
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9FII6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.