Factsheet for Bra029985.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83103	Canola	nucleus	98.64	98.2
CDX68558	Canola	nucleus	95.48	95.05
CDX68559	Canola	nucleus	95.02	93.33
Bra012914.1-P	Field mustard	nucleus	81.9	84.98
AT3G49930.1	Thale cress	nucleus	80.09	82.33
Bra037845.1-P	Field mustard	nucleus	61.99	59.31
Bra031834.1-P	Field mustard	nucleus	62.9	59.15
Bra024448.1-P	Field mustard	nucleus	59.28	54.36
Bra033666.1-P	Field mustard	nucleus	38.01	45.41
VIT_07s0129g00240.t01	Wine grape	nucleus	45.25	42.92
TraesCS4A01G236000.1	Wheat	nucleus	38.91	42.16
TraesCS4D01G077900.1	Wheat	nucleus	40.72	41.1
Bra010922.1-P	Field mustard	nucleus	42.53	40.34
TraesCS4B01G079000.1	Wheat	nucleus	39.82	40.0
Bra032845.1-P	Field mustard	nucleus	41.18	39.74
HORVU4Hr1G013460.1	Barley	nucleus	39.37	39.73
Os03t0610400-01	Rice	nucleus	40.72	37.82
TraesCS5B01G076400.1	Wheat	nucleus	39.82	36.82
Bra009464.1-P	Field mustard	plastid	37.56	36.4
TraesCS5D01G082700.1	Wheat	nucleus	38.46	35.71
TraesCS5A01G070600.1	Wheat	nucleus	38.91	35.68
Bra022436.1-P	Field mustard	nucleus	42.99	35.58
Bra001752.1-P	Field mustard	nucleus	42.99	35.58
Bra038219.1-P	Field mustard	nucleus	42.08	35.23
GSMUA_Achr5P08730_001	Banana	nucleus	38.46	34.41
Os12t0583700-00	Rice	nucleus	37.56	33.6
Zm00001d030858_P001	Maize	nucleus	36.2	28.88
EES16240	Sorghum	nucleus	36.2	27.59
GSMUA_Achr6P24730_001	Banana	nucleus	33.48	26.81
Bra040325.1-P	Field mustard	nucleus	29.41	23.13
Bra014483.1-P	Field mustard	nucleus	25.79	22.35
Bra003422.1-P	Field mustard	nucleus	29.41	21.89
Bra007545.1-P	Field mustard	nucleus	28.96	21.55
Bra000372.1-P	Field mustard	mitochondrion, nucleus	29.86	21.29
Bra012953.1-P	Field mustard	plastid	23.53	18.91
Bra029315.1-P	Field mustard	nucleus	19.46	18.45
Bra018817.1-P	Field mustard	nucleus	29.86	17.69
Bra040741.1-P	Field mustard	nucleus	14.03	14.83
Bra012701.1-P	Field mustard	nucleus, plastid	14.03	14.49
Bra038491.1-P	Field mustard	nucleus	14.93	8.48

Protein Annotations

EnsemblPlants:Bra029985.1	EnsemblPlants:Bra029985.1-P	EnsemblPlantsGene:Bra029985	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF263	PFAM:PF13912
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002544347
UniProt:M4EMG5	MapMan:15.5.15	:	:	:	:

Description

AT3G49930 (E=2e-065) | zinc finger (C2H2 type) family protein

Coordinates

chrA01:+:15491197..15491862

Molecular Weight (calculated)

23948.3 Da

IEP (calculated)

7.160

GRAVY (calculated)

-1.051

Length

221 amino acids

Sequence
(BLAST)

001: MALDTLNSPN STTTAPSPFL TEPENLEPWT KRKRTKRHRI DDKSNPPSEE EYLALCLLML ARGSSDDDHH SSPPPPPSDH HHRDYKCSVC GKSFPSYQAL
101: GGHKTSHRKP VSNNNNNHDD NNNSGNGSIT NNGNISNGLI GQSGKTHKCS ICFKSFPSGQ ALGGHKRCHY DGGNSNSNIN GNGSNSHGFD LNLPADQVFE
201: VSCDETLGKS QLSGEETKSP L

Best Arabidopsis Sequence Match ( AT3G49930.1 )
(BLAST)

001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL

Arabidopsis Description

At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.