Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02102 | Canola | nucleus | 29.55 | 46.2 |
| GSMUA_Achr4P28230_001 | Banana | nucleus | 39.27 | 45.33 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 36.84 | 44.61 |
| CDY30794 | Canola | nucleus | 34.01 | 44.44 |
| CDY22361 | Canola | nucleus | 33.2 | 44.32 |
| PGSC0003DMT400091896 | Potato | nucleus | 34.01 | 44.21 |
| GSMUA_Achr5P01720_001 | Banana | nucleus | 40.49 | 43.86 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 38.87 | 43.64 |
| CDY23027 | Canola | nucleus | 29.96 | 43.53 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 38.46 | 43.38 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 38.46 | 43.38 |
| Bra033666.1-P | Field mustard | nucleus | 31.98 | 42.7 |
| GSMUA_Achr9P26580_001 | Banana | nucleus | 36.03 | 42.58 |
| GSMUA_Achr2P13410_001 | Banana | nucleus | 41.7 | 42.39 |
| KRH15443 | Soybean | nucleus | 39.68 | 42.06 |
| Solyc12g088390.1.1 | Tomato | nucleus | 34.01 | 42.0 |
| VIT_18s0001g09230.t01 | Wine grape | nucleus | 39.27 | 41.63 |
| PGSC0003DMT400030168 | Potato | nucleus | 35.22 | 41.63 |
| AT5G43170.1 | Thale cress | nucleus | 32.39 | 41.45 |
| AT3G49930.1 | Thale cress | nucleus | 35.22 | 40.47 |
| Os03t0610400-01 | Rice | nucleus | 38.87 | 40.34 |
| CDX81313 | Canola | nucleus | 30.36 | 40.32 |
| CDX84907 | Canola | nucleus | 36.44 | 39.3 |
| Os12t0583700-00 | Rice | nucleus | 39.27 | 39.27 |
| VIT_03s0091g00690.t01 | Wine grape | nucleus | 37.25 | 39.15 |
| Bra012914.1-P | Field mustard | nucleus | 33.6 | 38.97 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 37.65 | 38.91 |
| CDY27629 | Canola | nucleus | 36.03 | 38.86 |
| Bra032845.1-P | Field mustard | nucleus | 36.03 | 38.86 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 37.25 | 38.66 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 36.44 | 38.63 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 37.65 | 38.59 |
| CDY03945 | Canola | nucleus | 36.03 | 38.53 |
| Bra029985.1-P | Field mustard | nucleus | 34.41 | 38.46 |
| KRH05601 | Soybean | nucleus | 37.25 | 38.33 |
| CDX83103 | Canola | nucleus | 34.41 | 38.29 |
| CDY51312 | Canola | nucleus | 34.01 | 38.18 |
| AT1G27730.1 | Thale cress | nucleus | 34.82 | 37.89 |
| AT5G04340.1 | Thale cress | nucleus | 36.44 | 37.82 |
| KRH52082 | Soybean | nucleus | 35.63 | 37.77 |
| CDX68558 | Canola | nucleus | 33.6 | 37.39 |
| Bra010922.1-P | Field mustard | nucleus | 35.22 | 37.34 |
| KRH61394 | Soybean | nucleus | 35.22 | 37.34 |
| CDX90105 | Canola | nucleus | 35.22 | 37.34 |
| CDX68559 | Canola | nucleus | 34.01 | 37.33 |
| PGSC0003DMT400055391 | Potato | nucleus | 29.15 | 37.31 |
| KRH35675 | Soybean | nucleus | 38.46 | 36.97 |
| Solyc04g077980.1.1 | Tomato | nucleus, plastid | 38.87 | 36.92 |
| CDY11770 | Canola | nucleus | 34.82 | 36.91 |
| CDX70236 | Canola | nucleus, plastid | 34.01 | 36.84 |
| Bra009464.1-P | Field mustard | plastid | 34.01 | 36.84 |
| CDY18661 | Canola | nucleus | 30.36 | 36.23 |
| KRG91102 | Soybean | nucleus | 38.06 | 36.15 |
| CDY43576 | Canola | nucleus | 30.36 | 35.89 |
| CDY37851 | Canola | nucleus | 31.17 | 35.81 |
| CDX95435 | Canola | nucleus | 37.25 | 35.25 |
| CDX99202 | Canola | nucleus | 37.65 | 34.96 |
| Bra038219.1-P | Field mustard | nucleus | 37.25 | 34.85 |
| Bra022436.1-P | Field mustard | nucleus | 37.65 | 34.83 |
| CDY65161 | Canola | nucleus | 37.65 | 34.7 |
| CDY42192 | Canola | nucleus | 36.84 | 34.47 |
| Bra001752.1-P | Field mustard | nucleus | 37.25 | 34.46 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 38.46 | 34.42 |
| CDX82290 | Canola | nucleus | 37.25 | 34.2 |
| CDY46162 | Canola | nucleus | 36.84 | 34.08 |
| Bra037845.1-P | Field mustard | nucleus | 31.58 | 33.77 |
| PGSC0003DMT400086329 | Potato | nucleus, plastid | 31.58 | 33.77 |
| AT3G19580.1 | Thale cress | nucleus | 37.25 | 33.7 |
| PGSC0003DMT400084751 | Potato | nucleus | 35.22 | 33.21 |
| PGSC0003DMT400040388 | Potato | cytosol | 28.34 | 33.02 |
| Bra031834.1-P | Field mustard | nucleus | 31.17 | 32.77 |
| Zm00001d030858_P001 | Maize | nucleus | 36.44 | 32.49 |
| PGSC0003DMT400085102 | Potato | nucleus | 29.55 | 32.44 |
| PGSC0003DMT400072661 | Potato | nucleus | 34.01 | 32.43 |
| AT5G67450.1 | Thale cress | nucleus | 31.58 | 31.84 |
| Bra024448.1-P | Field mustard | nucleus | 30.77 | 31.54 |
| CDY08718 | Canola | nucleus | 30.77 | 31.54 |
| CDY36493 | Canola | nucleus | 30.36 | 31.12 |
| PGSC0003DMT400095976 | Potato | nucleus | 29.96 | 31.09 |
| EES16240 | Sorghum | nucleus | 36.03 | 30.69 |
| PGSC0003DMT400006126 | Potato | nucleus | 34.82 | 29.86 |
| Solyc01g107170.2.1 | Tomato | nucleus | 35.63 | 28.39 |
| PGSC0003DMT400024799 | Potato | cytosol | 20.65 | 26.15 |
| GSMUA_Achr4P12160_001 | Banana | mitochondrion | 18.62 | 23.59 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 21.86 | 23.48 |
| GSMUA_Achr5P15450_001 | Banana | mitochondrion | 23.08 | 20.58 |
| GSMUA_Achr5P13370_001 | Banana | mitochondrion, nucleus | 24.29 | 20.27 |
| GSMUA_Achr4P26920_001 | Banana | mitochondrion | 22.27 | 20.15 |
| GSMUA_Achr2P18480_001 | Banana | nucleus | 19.03 | 19.18 |
| GSMUA_Achr4P05560_001 | Banana | nucleus | 17.81 | 19.13 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 19.43 | 18.6 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 20.24 | 18.45 |
| GSMUA_Achr1P01550_001 | Banana | nucleus | 21.86 | 18.37 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 19.43 | 17.39 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.89 | 15.99 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 19.43 | 14.68 |
| GSMUA_Achr1P24150_001 | Banana | mitochondrion | 14.98 | 13.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.48 | 7.02 |
| GSMUA_Achr7P04600_001 | Banana | nucleus | 8.91 | 6.09 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P08730_001 | EnsemblPlants:GSMUA_Achr5T08730_001 | EnsemblPlantsGene:GSMUA_Achr5G08730_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0002967CE1 | UniProt:M0SWV2 | MapMan:15.5.15 | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G08730_001]
Coordinates
chr5:+:6325535..6326481
Molecular Weight (calculated)
26078.8 Da
IEP (calculated)
9.051
GRAVY (calculated)
-0.454
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDTVETVV SRDETTPTTP YQVESWAKGK RSKRPRASSS PAVSEKDDGR IPTEEEFLAL CLMMLSRGVN GRSDLRTATQ SYECSVCGKA FPSYQALGGH
101: KTSHRKPVAA AATAGGDAVT SASTSGATSV PGRAHECSVC HKSFPTGQAL GGHMRCHYEG VNARAAATSS SGVASSGKDQ GFDLNLPPAS QRLPTMGLIG
201: GGWDKEKRKK EEEEVLSPLA LTNKKPRVLT PSTRGIEATP LTLISFI
101: KTSHRKPVAA AATAGGDAVT SASTSGATSV PGRAHECSVC HKSFPTGQAL GGHMRCHYEG VNARAAATSS SGVASSGKDQ GFDLNLPPAS QRLPTMGLIG
201: GGWDKEKRKK EEEEVLSPLA LTNKKPRVLT PSTRGIEATP LTLISFI
001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
Arabidopsis Description
At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.