Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063187 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43170.1 | PGSC0003DMT400063187 | AT1G19050.1 | 18642946 |
| AT5G43170.1 | PGSC0003DMT400063187 | AT1G74890.1 | 18642946 |
| AT5G43170.1 | PGSC0003DMT400063187 | AT5G62920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g107170.2.1 | Tomato | nucleus | 90.84 | 76.77 |
| PGSC0003DMT400091896 | Potato | nucleus | 36.26 | 50.0 |
| PGSC0003DMT400030168 | Potato | nucleus | 38.55 | 48.33 |
| CDY22361 | Canola | nucleus | 33.97 | 48.11 |
| CDY30794 | Canola | nucleus | 34.35 | 47.62 |
| Bra033666.1-P | Field mustard | nucleus | 33.21 | 47.03 |
| CDY03945 | Canola | nucleus | 40.46 | 45.89 |
| CDY27629 | Canola | nucleus | 40.08 | 45.85 |
| Bra032845.1-P | Field mustard | nucleus | 39.69 | 45.41 |
| CDX84907 | Canola | nucleus | 39.69 | 45.41 |
| AT5G43170.1 | Thale cress | nucleus | 33.21 | 45.08 |
| CDX90105 | Canola | nucleus | 40.08 | 45.06 |
| Bra010922.1-P | Field mustard | nucleus | 40.08 | 45.06 |
| CDY11770 | Canola | nucleus | 39.69 | 44.64 |
| AT1G27730.1 | Thale cress | nucleus | 38.55 | 44.49 |
| KRH15443 | Soybean | nucleus | 39.31 | 44.21 |
| CDX70236 | Canola | nucleus, plastid | 38.17 | 43.86 |
| Bra009464.1-P | Field mustard | plastid | 38.17 | 43.86 |
| CDY51312 | Canola | nucleus | 36.64 | 43.64 |
| PGSC0003DMT400055391 | Potato | nucleus | 31.68 | 43.01 |
| KRH05601 | Soybean | nucleus | 39.31 | 42.92 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 32.44 | 41.67 |
| AT5G04340.1 | Thale cress | nucleus | 37.79 | 41.6 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 33.97 | 40.45 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 33.59 | 40.18 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 32.44 | 38.81 |
| Os12t0583700-00 | Rice | nucleus | 35.88 | 38.06 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 33.59 | 36.97 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 33.59 | 36.51 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 33.21 | 36.4 |
| PGSC0003DMT400086329 | Potato | nucleus, plastid | 31.68 | 35.93 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 33.21 | 35.22 |
| Os03t0610400-01 | Rice | nucleus | 31.68 | 34.87 |
| PGSC0003DMT400072661 | Potato | nucleus | 33.97 | 34.36 |
| PGSC0003DMT400085102 | Potato | nucleus | 28.24 | 32.89 |
| PGSC0003DMT400040388 | Potato | cytosol | 26.34 | 32.55 |
| PGSC0003DMT400006126 | Potato | nucleus | 35.11 | 31.94 |
| PGSC0003DMT400095976 | Potato | nucleus | 28.63 | 31.51 |
| EES16240 | Sorghum | nucleus | 34.73 | 31.38 |
| Zm00001d030858_P001 | Maize | nucleus | 32.82 | 31.05 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 32.44 | 30.8 |
| PGSC0003DMT400024799 | Potato | cytosol | 22.14 | 29.74 |
| PGSC0003DMT400053945 | Potato | cytosol | 15.65 | 26.8 |
| PGSC0003DMT400066939 | Potato | nucleus | 24.05 | 19.09 |
| PGSC0003DMT400012154 | Potato | nucleus | 21.37 | 18.79 |
| PGSC0003DMT400030986 | Potato | nucleus | 21.76 | 18.69 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | ProteinID:ABK78777 | ProteinID:ABK78777.1 | EMBL:EF093186 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | UniProt:M1D7Y9 | PFAM:PF13912 | EnsemblPlantsGene:PGSC0003DMG400034322 |
| PGSC:PGSC0003DMG400034322 | EnsemblPlants:PGSC0003DMT400084751 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000295078E | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400034322]
Coordinates
chr1:+:83673568..83674356
Molecular Weight (calculated)
28017.1 Da
IEP (calculated)
8.288
GRAVY (calculated)
-0.602
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIEALKSPT AAALPPLEEI DDSHNLDSWA KGKRSKRPRI ENPPTPDQYL ALCLLMLAND DGTGFGKGKG TGSIGVVIEQ QQEKKLLKPV FIKEKTEQLF
101: KCSECPKVFT SYQALGGHKA SHRKINVPAT GNDDNNPSTS TSTSGNISAL NPSGRSHVCS VCQKAFPTGQ ALGGHKRRHY EGKLGGNNRY ISGEGLQSGS
201: VVTTSDGGGA STPIARDFDL NMPASPGCQL DLTIDCGGRS QHPIEQEVES PMPAKKPRLF FD
101: KCSECPKVFT SYQALGGHKA SHRKINVPAT GNDDNNPSTS TSTSGNISAL NPSGRSHVCS VCQKAFPTGQ ALGGHKRRHY EGKLGGNNRY ISGEGLQSGS
201: VVTTSDGGGA STPIARDFDL NMPASPGCQL DLTIDCGGRS QHPIEQEVES PMPAKKPRLF FD
001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
Arabidopsis Description
ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.