Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400055239 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | PGSC0003DMT400055239 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g090840.2.1 | Tomato | nucleus | 89.7 | 91.64 |
| PGSC0003DMT400053945 | Potato | cytosol | 26.36 | 56.86 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 52.73 | 48.47 |
| CDY37027 | Canola | nucleus | 39.7 | 46.62 |
| Bra040325.1-P | Field mustard | nucleus | 39.7 | 46.62 |
| CDY27394 | Canola | nucleus | 40.0 | 46.32 |
| CDY71582 | Canola | nucleus | 37.88 | 45.96 |
| AT3G60580.1 | Thale cress | nucleus | 40.0 | 45.83 |
| CDY41155 | Canola | nucleus | 33.94 | 45.16 |
| CDX67836 | Canola | nucleus | 40.3 | 45.08 |
| CDX71799 | Canola | nucleus | 35.45 | 45.0 |
| CDX95629 | Canola | nucleus | 37.27 | 44.89 |
| Bra003422.1-P | Field mustard | nucleus | 40.3 | 44.78 |
| KRH76140 | Soybean | nucleus | 49.09 | 44.38 |
| Bra007545.1-P | Field mustard | nucleus | 39.39 | 43.77 |
| CDX83402 | Canola | nucleus | 39.39 | 43.62 |
| KRH65408 | Soybean | nucleus | 50.91 | 43.3 |
| CDX89061 | Canola | nucleus | 33.94 | 42.59 |
| Bra000372.1-P | Field mustard | mitochondrion, nucleus | 38.79 | 41.29 |
| KRH75355 | Soybean | nucleus | 48.18 | 40.87 |
| CDY48363 | Canola | nucleus | 35.45 | 40.77 |
| AT2G45120.1 | Thale cress | nucleus | 38.48 | 40.45 |
| Bra014483.1-P | Field mustard | nucleus | 30.91 | 40.0 |
| PGSC0003DMT400030986 | Potato | nucleus | 35.15 | 38.03 |
| PGSC0003DMT400012154 | Potato | nucleus | 30.91 | 34.23 |
| PGSC0003DMT400091896 | Potato | nucleus | 19.7 | 34.21 |
| PGSC0003DMT400030168 | Potato | nucleus | 20.61 | 32.54 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 24.55 | 31.4 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 24.85 | 29.71 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 24.24 | 29.52 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 26.36 | 26.61 |
| PGSC0003DMT400055391 | Potato | nucleus | 15.45 | 26.42 |
| PGSC0003DMT400086329 | Potato | nucleus, plastid | 18.48 | 26.41 |
| PGSC0003DMT400072661 | Potato | nucleus | 19.39 | 24.71 |
| PGSC0003DMT400084751 | Potato | nucleus | 19.09 | 24.05 |
| PGSC0003DMT400006126 | Potato | nucleus | 20.0 | 22.92 |
| PGSC0003DMT400085102 | Potato | nucleus | 15.45 | 22.67 |
| PGSC0003DMT400040388 | Potato | cytosol | 14.24 | 22.17 |
| PGSC0003DMT400095976 | Potato | nucleus | 14.85 | 20.59 |
| PGSC0003DMT400024799 | Potato | cytosol | 11.21 | 18.97 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400066939 | EnsemblPlantsGene:PGSC0003DMG400026020 | EntrezGene:102582633 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 |
| PFAM:PF13912 | PFscan:PS50157 | PGSC:PGSC0003DMG400026020 | RefSeq:XP_006347910.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000296EBEC | UniProt:M1CGE9 | MapMan:15.5.15 | : |
Description
C2H2 zinc-finger protein ZPT3-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400026020]
Coordinates
chr1:+:70137276..70138605
Molecular Weight (calculated)
36876.1 Da
IEP (calculated)
6.031
GRAVY (calculated)
-0.818
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKNKICKLC SRKFANGRAL GGHMRSHMMN LQLHQHETES IPSSSWSDEE EKGKILNSSD ADADADADDS AVVLPDKESE TESSKNPIRF KRSKRVRKSR
101: KPNFVKITEY YSSVVETEPV SSISENSPEE DVAHCLMMLS RDKWNKKEQV DFYSDEEEED EQVKEENSED SEGGEVKVTT KSTRGRGKYR CETCNKVFRS
201: YQALGGHRAS HKKIKLSNEV VESARNNNVV VEEKIHQCPV CYRVFPSGQA LGGHKRSHTI GAVVATSVTV LPPLPPPPAP AKLELSRTGG TSLIDLNFPP
301: PMEDDDEIIS QVEVSAVSDA EFVNPIKNQR
101: KPNFVKITEY YSSVVETEPV SSISENSPEE DVAHCLMMLS RDKWNKKEQV DFYSDEEEED EQVKEENSED SEGGEVKVTT KSTRGRGKYR CETCNKVFRS
201: YQALGGHRAS HKKIKLSNEV VESARNNNVV VEEKIHQCPV CYRVFPSGQA LGGHKRSHTI GAVVATSVTV LPPLPPPPAP AKLELSRTGG TSLIDLNFPP
301: PMEDDDEIIS QVEVSAVSDA EFVNPIKNQR
001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
Arabidopsis Description
ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.