Factsheet for PGSC0003DMT400030986

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060740.1.1	Tomato	nucleus	98.03	97.71
PGSC0003DMT400012154	Potato	nucleus	54.75	56.04
KRH28087	Soybean	nucleus	44.26	46.88
KRH57408	Soybean	nucleus	40.66	46.79
KRH04135	Soybean	nucleus	40.33	46.77
KRH77360	Soybean	nucleus	45.57	46.64
GSMUA_Achr4P26920_001	Banana	mitochondrion	38.36	42.86
VIT_00s0229g00050.t01	Wine grape	nucleus	44.26	41.8
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	30.82	40.87
GSMUA_Achr5P15450_001	Banana	mitochondrion	36.72	40.43
GSMUA_Achr2P18480_001	Banana	nucleus	32.46	40.41
PGSC0003DMT400053945	Potato	cytosol	20.0	39.87
CDY09671	Canola	nucleus	25.25	38.5
CDY53641	Canola	nucleus	25.9	37.8
CDY50848	Canola	nucleus	25.9	37.8
Bra040741.1-P	Field mustard	nucleus	25.9	37.8
AT4G16610.1	Thale cress	nucleus	25.25	37.75
CDY40527	Canola	nucleus	23.93	37.63
CDY32274	Canola	nucleus	24.26	37.56
GSMUA_Achr4P12160_001	Banana	mitochondrion	23.28	36.41
CDY69391	Canola	nucleus	25.25	35.98
Bra012701.1-P	Field mustard	nucleus, plastid	24.92	35.51
PGSC0003DMT400066939	Potato	nucleus	38.03	35.15
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	33.44	34.46
GSMUA_Achr1P01550_001	Banana	nucleus	33.11	34.35
GSMUA_Achr1P24150_001	Banana	mitochondrion	28.85	33.08
HORVU0Hr1G030680.1	Barley	nucleus	32.79	31.95
HORVU6Hr1G063280.1	Barley	mitochondrion, nucleus, plastid	32.79	31.95
TraesCS6A01G248700.1	Wheat	nucleus	32.79	31.85
TraesCS6D01G230800.1	Wheat	nucleus	32.79	31.75
TraesCS1A01G211800.1	Wheat	nucleus	34.75	31.74
Zm00001d002731_P001	Maize	nucleus	31.8	31.6
TraesCS6B01G276100.1	Wheat	nucleus	32.46	31.53
TraesCS1B01G225500.1	Wheat	nucleus	34.75	31.09
HORVU2Hr1G097410.1	Barley	nucleus	29.84	30.95
TraesCS2A01G413100.1	Wheat	nucleus	29.84	30.95
TraesCS1D01G214900.1	Wheat	nucleus	34.43	30.79
HORVU1Hr1G054170.1	Barley	nucleus	34.43	30.61
Os10t0555300-01	Rice	mitochondrion, nucleus	35.74	30.36
Zm00001d047102_P001	Maize	nucleus	33.77	30.29
TraesCS2B01G431800.1	Wheat	nucleus	30.16	29.77
TraesCS2D01G410300.1	Wheat	nucleus	29.84	29.64
Zm00001d029917_P001	Maize	nucleus	33.11	29.62
EES11238	Sorghum	mitochondrion	32.13	29.43
OQU85696	Sorghum	mitochondrion	32.46	29.38
HORVU2Hr1G097440.1	Barley	mitochondrion	20.98	29.36
GSMUA_Achr4P05560_001	Banana	nucleus	21.97	29.13
Os02t0659500-01	Rice	mitochondrion	32.46	29.03
PGSC0003DMT400030168	Potato	nucleus	19.67	28.71
PGSC0003DMT400091896	Potato	nucleus	17.38	27.89
Zm00001d051371_P001	Maize	mitochondrion	30.82	27.73
Zm00001d017497_P001	Maize	mitochondrion	28.2	27.22
EER91950	Sorghum	mitochondrion, plastid	34.1	26.94
GSMUA_AchrUn_...	Banana	mitochondrion	29.51	24.39
PGSC0003DMT400086329	Potato	nucleus, plastid	18.36	24.24
GSMUA_AchrUn_...	Banana	nucleus	18.03	24.12
PGSC0003DMT400072661	Potato	nucleus	20.0	23.55
PGSC0003DMT400055391	Potato	nucleus	13.77	21.76
PGSC0003DMT400084751	Potato	nucleus	18.69	21.76
PGSC0003DMT400085102	Potato	nucleus	15.74	21.33
PGSC0003DMT400006126	Potato	nucleus	19.67	20.83
Bra038491.1-P	Field mustard	nucleus	24.59	19.28
PGSC0003DMT400095976	Potato	nucleus	14.75	18.91
PGSC0003DMT400040388	Potato	cytosol	13.11	18.87
PGSC0003DMT400024799	Potato	cytosol	10.49	16.41
GSMUA_Achr7P04600_001	Banana	nucleus	18.69	15.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400030986	EnsemblPlantsGene:PGSC0003DMG400011873	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185	PFAM:PF13912
PFscan:PS50157	PGSC:PGSC0003DMG400011873	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI00029661A9	UniProt:M1AV17	MapMan:15.5.15	:	:	:

Description

Cys2/His2 zinc-finger transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400011873]

Coordinates

chr6:+:43919366..43920754

Molecular Weight (calculated)

34178.2 Da

IEP (calculated)

8.664

GRAVY (calculated)

-0.993

Length

305 amino acids

Sequence
(BLAST)

001: MSMEKHKCKL CSRKFTSGKA MGGHMRSHLR TLPLPPKTPP QKQDSGGGGG RSESTLSLYS LKEEEGEEIG EEKHLGYGLR ENPKKSSRIV DPEFMDAGSV
101: VHDRDQSETE STKKPTRRRS KRTRRMFVSD EAAVDDHQEV KKEKSAEFEP VSSFSDTSPE EDIAVCLMML SKDVWRNSKF RDQNSKEKYQ CEICNKVLKS
201: SQALGSHKTI HKKNNSEEQN KGKSRELRLK NVDEKLHECP FCGKIFGSGQ ALGGHKRSHI LSSSITASSS SKVGDSLMDS SSAKFPYGFI DLNMPAPMED
301: EDFSH

Best Arabidopsis Sequence Match ( AT3G60580.1 )
(BLAST)

001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ

Arabidopsis Description

ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.