CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002731_P001	Maize	nucleus	84.68	91.86
HORVU2Hr1G097410.1	Barley	nucleus	65.77	74.49
TraesCS2A01G413100.1	Wheat	nucleus	65.17	73.81
TraesCS2B01G431800.1	Wheat	nucleus	68.47	73.79
TraesCS2D01G410300.1	Wheat	nucleus	66.07	71.66
HORVU2Hr1G097440.1	Barley	mitochondrion	42.04	64.22
OQU85696	Sorghum	mitochondrion	55.26	54.6
GSMUA_Achr4P12160_001	Banana	mitochondrion	27.93	47.69
KRH04135	Soybean	nucleus	32.43	41.06
KRH57408	Soybean	nucleus	32.13	40.38
KRH28087	Soybean	nucleus	34.23	39.58
KRH77360	Soybean	nucleus	34.23	38.26
CDY09671	Canola	nucleus	21.62	36.0
CDY40527	Canola	nucleus	20.72	35.57
CDY32274	Canola	nucleus	21.02	35.53
VIT_00s0229g00050.t01	Wine grape	nucleus	34.23	35.29
EER91950	Sorghum	mitochondrion, plastid	40.84	35.23
AT4G16610.1	Thale cress	nucleus	21.32	34.8
CDY53641	Canola	nucleus	21.62	34.45
CDY50848	Canola	nucleus	21.62	34.45
Bra040741.1-P	Field mustard	nucleus	21.62	34.45
GSMUA_Achr4P05560_001	Banana	nucleus	23.72	34.35
Bra012701.1-P	Field mustard	nucleus, plastid	21.92	34.11
CDY69391	Canola	nucleus	21.92	34.11
GSMUA_Achr1P24150_001	Banana	mitochondrion	27.03	33.83
PGSC0003DMT400030986	Potato	nucleus	29.43	32.13
Solyc06g060740.1.1	Tomato	nucleus	29.43	32.03
PGSC0003DMT400012154	Potato	nucleus	26.43	29.53
OQU90180	Sorghum	nucleus, plastid	21.02	29.29
KRH39952	Soybean	nucleus	26.43	28.76
Solyc08g078590.1.1	Tomato	nucleus	24.02	28.47
GSMUA_AchrUn_...	Banana	mitochondrion	29.73	26.83
EER97472	Sorghum	nucleus	14.11	23.86
GSMUA_AchrUn_...	Banana	nucleus	16.22	23.68
EER92087	Sorghum	nucleus	17.12	22.27
EER92089	Sorghum	nucleus	13.81	22.22
EER92088	Sorghum	nucleus	15.62	22.03
EER90834	Sorghum	nucleus	19.22	21.99
EES16240	Sorghum	nucleus	18.02	20.69
Bra038491.1-P	Field mustard	nucleus	20.72	17.74
GSMUA_Achr7P04600_001	Banana	nucleus	17.12	15.79

Protein Annotations

MapMan:15.5.15	EntrezGene:8083375	UniProt:C5YDI4	EnsemblPlants:EES11238	ProteinID:EES11238	ProteinID:EES11238.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:IPR013087	PFAM:PF13894	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR26374	PANTHER:PTHR26374:SF323	SMART:SM00355	EnsemblPlantsGene:SORBI_3006G171600	SUPFAM:SSF57667	unigene:Sbi.13947
UniParc:UPI0001A86FD7	RefSeq:XP_002446910.1	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:52793159..52794884

Molecular Weight (calculated)

34873.3 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.547

Length

333 amino acids

Sequence
(BLAST)

001: MAKNTCKLCS RRFASPRALA GHMRAHSVAA AKSQISSASS ASTSIAAGGG IDDDAADAKK KPSPIQGGHV LREKNPKRRV RLDDDSDFSD RESETTDYYS
101: PASPDAKRSH AGSGDAEPVS SVSDAATPEE DVALSLMMLS RDSWPAPPPS PYPYPFRLDS DDDDDDARRV VAAATAAAAA AQQKRTRYEC PACKKVFRSY
201: QALGGHRASN VRGGRGGCCA PPLSTPPPPG PAPLQPLPEC EGSEEDSKAQ QPHECPYCFR VFPSGQALGG HKRSHLCSAA AAAAAAAVTS SADPSSITMK
301: SLDFIDLNLP APFDDVEVSA FSDPFLSSKP AGS

Best Arabidopsis Sequence Match ( AT1G02030.1 )
(BLAST)

001: MEERHKCKLC WKSFANGRAL GGHMRSHMLI HPLPSQPESY SSSMADPGFV LQDRESETES SKKPSRKRSR LNRRSISSLR HQQSNEEGKS ETARAADIKI
101: GVQELSESCT EQEPMSSVSD AATTEEDVAL SLMLLSRDKW EKEEEESDEE RWKKKRNKWF ECETCEKVFK SYQALGGHRA SHKKKIAETD QLGSDELKKK
201: KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR RSGIIISLID LNLPAPSEEE EMASSVF

Arabidopsis Description

ZAT1Zinc finger protein ZAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q39092]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.