Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G097410.1 | Barley | nucleus | 84.4 | 62.59 |
| TraesCS2A01G413100.1 | Wheat | nucleus | 73.39 | 54.42 |
| TraesCS2D01G410300.1 | Wheat | nucleus | 73.85 | 52.44 |
| TraesCS2B01G431800.1 | Wheat | nucleus | 72.94 | 51.46 |
| EES11238 | Sorghum | mitochondrion | 64.22 | 42.04 |
| Zm00001d002731_P001 | Maize | nucleus | 57.34 | 40.72 |
| HORVU6Hr1G063280.1 | Barley | mitochondrion, nucleus, plastid | 54.59 | 38.02 |
| HORVU0Hr1G030680.1 | Barley | nucleus | 54.59 | 38.02 |
| CDY09671 | Canola | nucleus | 26.61 | 29.0 |
| AT4G16610.1 | Thale cress | nucleus | 26.61 | 28.43 |
| CDY32274 | Canola | nucleus | 25.23 | 27.92 |
| CDY40527 | Canola | nucleus | 24.77 | 27.84 |
| Bra012701.1-P | Field mustard | nucleus, plastid | 27.06 | 27.57 |
| CDY69391 | Canola | nucleus | 27.06 | 27.57 |
| CDY50848 | Canola | nucleus | 26.15 | 27.27 |
| CDY53641 | Canola | nucleus | 26.15 | 27.27 |
| Bra040741.1-P | Field mustard | nucleus | 26.15 | 27.27 |
| GSMUA_Achr4P12160_001 | Banana | mitochondrion | 24.31 | 27.18 |
| KRH28087 | Soybean | nucleus | 33.95 | 25.69 |
| HORVU1Hr1G054170.1 | Barley | nucleus | 39.91 | 25.36 |
| KRH77360 | Soybean | nucleus | 34.4 | 25.17 |
| KRH04135 | Soybean | nucleus | 30.28 | 25.1 |
| KRH57408 | Soybean | nucleus | 30.28 | 24.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.85 | 22.81 |
| VIT_00s0229g00050.t01 | Wine grape | nucleus | 32.57 | 21.98 |
| Solyc06g060740.1.1 | Tomato | nucleus | 29.82 | 21.24 |
| PGSC0003DMT400030986 | Potato | nucleus | 29.36 | 20.98 |
| KRH39952 | Soybean | nucleus | 27.06 | 19.28 |
| GSMUA_Achr4P05560_001 | Banana | nucleus | 20.18 | 19.13 |
| GSMUA_Achr1P24150_001 | Banana | mitochondrion | 22.94 | 18.8 |
| PGSC0003DMT400012154 | Potato | nucleus | 25.69 | 18.79 |
| Solyc08g078590.1.1 | Tomato | nucleus | 22.94 | 17.79 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 28.44 | 16.8 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 16.51 | 16.44 |
| HORVU3Hr1G028100.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 14.22 | 15.58 |
| Bra038491.1-P | Field mustard | nucleus | 25.23 | 14.14 |
| GSMUA_Achr7P04600_001 | Banana | nucleus | 22.48 | 13.57 |
| HORVU2Hr1G014870.1 | Barley | nucleus | 11.01 | 11.11 |
| HORVU5Hr1G097500.3 | Barley | nucleus, plastid | 11.47 | 8.09 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G097440.1 | EnsemblPlantsGene:HORVU2Hr1G097440 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF323 | PFAM:PF13912 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chrchr2H:+:679117661..679118509
Molecular Weight (calculated)
20190.6 Da
IEP (calculated)
9.495
GRAVY (calculated)
-0.509
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKNTCKLCS RRFASPRALA GHMRSHSVKV AARAQQISSA SSASTSFAAG DDDADAKMAI QAYVLRDKPK RRVRLAESDF SDRESEAEYP APDAKRVHAG
101: SRDAEPVSSV SDAATPEEDV ALSLMMLSRD SWPTVAWPRP SYFYHDAGEA APPAAAEQKR TRFQCPACKK VFRSYQALGG HRAXXXXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXWG
101: SRDAEPVSSV SDAATPEEDV ALSLMMLSRD SWPTVAWPRP SYFYHDAGEA APPAAAEQKR TRFQCPACKK VFRSYQALGG HRAXXXXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXWG
001: MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSARKKLG DSVYSSSSSS SDGKALAYGL RENPRKSFRV FNPDPESSTI YNSETETEPE SGDPVKKRVR
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:O23504]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.