Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G090200.1 | Wheat | nucleus | 80.56 | 88.78 |
| TraesCS2D01G088100.1 | Wheat | nucleus | 80.09 | 88.27 |
| TraesCS2B01G105900.1 | Wheat | nucleus | 80.56 | 87.0 |
| HORVU3Hr1G028100.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 66.67 | 72.36 |
| Zm00001d029584_P001 | Maize | nucleus | 53.24 | 64.61 |
| Os11t0340477-01 | Rice | nucleus | 59.72 | 64.5 |
| Os03t0437100-01 | Rice | nucleus | 59.72 | 64.5 |
| Zm00001d047330_P001 | Maize | nucleus | 54.17 | 61.9 |
| EER92089 | Sorghum | nucleus | 56.94 | 59.42 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 35.65 | 35.16 |
| HORVU5Hr1G097500.3 | Barley | nucleus, plastid | 34.72 | 24.27 |
| CDY70162 | Canola | nucleus | 18.06 | 18.22 |
| HORVU2Hr1G097410.1 | Barley | nucleus | 22.22 | 16.33 |
| HORVU0Hr1G030680.1 | Barley | nucleus | 23.15 | 15.97 |
| HORVU6Hr1G063280.1 | Barley | mitochondrion, nucleus, plastid | 23.15 | 15.97 |
| Bra029315.1-P | Field mustard | nucleus | 17.13 | 15.88 |
| CDY42873 | Canola | nucleus | 17.59 | 15.26 |
| HORVU1Hr1G054170.1 | Barley | nucleus | 21.3 | 13.41 |
| Bra012953.1-P | Field mustard | plastid | 16.67 | 13.09 |
| CDY02142 | Canola | nucleus | 16.2 | 12.87 |
| CDY23066 | Canola | plastid | 16.2 | 12.73 |
| AT5G61470.1 | Thale cress | nucleus | 16.67 | 11.84 |
| HORVU2Hr1G097440.1 | Barley | mitochondrion | 11.11 | 11.01 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G014870.1 | EnsemblPlantsGene:HORVU2Hr1G014870 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF178 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000B48396B |
| UniProt:A0A287H5E4 | MapMan:15.5.15 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:32644025..32644970
Molecular Weight (calculated)
23060.6 Da
IEP (calculated)
8.920
GRAVY (calculated)
-0.174
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: RFLIHYVHQA ANVSLSSGMP MMNMTHDDYV HLCLMALASV AAGGDQAEPA KGQWLQAMPA APAACELRFR CSVCGKAFPS HQALGGHKAS HRKRAVLVLP
101: LQSVSPAEET VASSSTSSGV GRHRCSVCHR SFPTGQALGG HKRCHYWDGL SVSLSASASG SASSVRGFDL NLTPVPEKAA AGMRIWGEDE EVQSPLPFKK
201: RRLSSPSSDR NLILLD
101: LQSVSPAEET VASSSTSSGV GRHRCSVCHR SFPTGQALGG HKRCHYWDGL SVSLSASASG SASSVRGFDL NLTPVPEKAA AGMRIWGEDE EVQSPLPFKK
201: RRLSSPSSDR NLILLD
001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
Arabidopsis Description
ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.