Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012953.1-P | Field mustard | plastid | 98.16 | 97.09 |
| CDY23066 | Canola | plastid | 95.22 | 94.18 |
| CDY42873 | Canola | nucleus | 56.25 | 61.45 |
| CDY70162 | Canola | nucleus | 45.22 | 57.48 |
| AT5G61470.1 | Thale cress | nucleus | 53.31 | 47.7 |
| CDY02102 | Canola | nucleus | 16.54 | 28.48 |
| CDY23027 | Canola | nucleus | 16.91 | 27.06 |
| CDX95629 | Canola | nucleus | 26.84 | 26.64 |
| CDY41155 | Canola | nucleus | 24.26 | 26.61 |
| CDX71799 | Canola | nucleus | 25.37 | 26.54 |
| CDY22361 | Canola | nucleus | 18.01 | 26.49 |
| CDY71582 | Canola | nucleus | 26.47 | 26.47 |
| CDX81313 | Canola | nucleus | 18.01 | 26.34 |
| CDY30794 | Canola | nucleus | 18.01 | 25.93 |
| CDX83402 | Canola | nucleus | 27.57 | 25.17 |
| CDX89061 | Canola | nucleus | 24.26 | 25.1 |
| CDY37027 | Canola | nucleus | 25.37 | 24.56 |
| CDX67836 | Canola | nucleus | 26.47 | 24.41 |
| CDY27394 | Canola | nucleus | 25.37 | 24.21 |
| CDY43576 | Canola | nucleus | 18.38 | 23.92 |
| CDY18661 | Canola | nucleus | 18.01 | 23.67 |
| CDY48363 | Canola | nucleus | 24.63 | 23.34 |
| CDX83103 | Canola | nucleus | 18.75 | 22.97 |
| CDY37851 | Canola | nucleus | 18.01 | 22.79 |
| CDX68559 | Canola | nucleus | 18.75 | 22.67 |
| CDX68558 | Canola | nucleus | 18.38 | 22.52 |
| CDY51312 | Canola | nucleus | 17.28 | 21.36 |
| CDX84907 | Canola | nucleus | 17.65 | 20.96 |
| CDY08718 | Canola | nucleus | 18.38 | 20.75 |
| CDY11770 | Canola | nucleus | 17.65 | 20.6 |
| CDX90105 | Canola | nucleus | 17.65 | 20.6 |
| CDY27629 | Canola | nucleus | 17.28 | 20.52 |
| CDY03945 | Canola | nucleus | 17.28 | 20.35 |
| CDY36493 | Canola | nucleus | 18.01 | 20.33 |
| Zm00001d029584_P001 | Maize | nucleus | 13.24 | 20.22 |
| CDX70236 | Canola | nucleus, plastid | 16.91 | 20.18 |
| TraesCS7B01G065700.1 | Wheat | nucleus | 15.44 | 19.72 |
| TraesCS7D01G161800.1 | Wheat | nucleus | 15.07 | 19.71 |
| Zm00001d047330_P001 | Maize | nucleus | 13.6 | 19.58 |
| TraesCS7A01G160700.2 | Wheat | nucleus | 15.44 | 19.53 |
| CDY09671 | Canola | nucleus | 13.97 | 19.0 |
| CDX95435 | Canola | nucleus | 18.01 | 18.77 |
| Zm00001d047334_P001 | Maize | nucleus | 15.44 | 18.67 |
| CDY42192 | Canola | nucleus | 18.01 | 18.56 |
| CDY40527 | Canola | nucleus | 13.24 | 18.56 |
| TraesCS2A01G090200.1 | Wheat | nucleus | 13.24 | 18.37 |
| EER92089 | Sorghum | nucleus | 13.97 | 18.36 |
| CDY46162 | Canola | nucleus | 18.01 | 18.35 |
| EER97472 | Sorghum | nucleus | 13.24 | 18.27 |
| CDY32274 | Canola | nucleus | 13.24 | 18.27 |
| EER92088 | Sorghum | nucleus | 15.81 | 18.22 |
| CDY50848 | Canola | nucleus | 13.97 | 18.18 |
| Zm00001d022002_P001 | Maize | nucleus | 13.24 | 18.18 |
| CDY53641 | Canola | nucleus | 13.97 | 18.18 |
| CDX99202 | Canola | nucleus | 17.65 | 18.05 |
| Zm00001d029586_P001 | Maize | nucleus | 15.44 | 18.03 |
| TraesCS2B01G105900.1 | Wheat | nucleus | 13.24 | 18.0 |
| CDY65161 | Canola | nucleus | 17.65 | 17.91 |
| TraesCS2D01G088100.1 | Wheat | nucleus | 12.87 | 17.86 |
| CDX82290 | Canola | nucleus | 17.65 | 17.84 |
| Zm00001d029587_P001 | Maize | nucleus | 16.18 | 17.74 |
| Zm00001d029589_P001 | Maize | nucleus | 13.6 | 17.62 |
| Os11t0340477-01 | Rice | nucleus | 12.87 | 17.5 |
| Os03t0437100-01 | Rice | nucleus | 12.87 | 17.5 |
| CDY69391 | Canola | nucleus | 13.6 | 17.29 |
| Os07t0590100-01 | Rice | cytosol, nucleus | 12.5 | 16.83 |
| EER92087 | Sorghum | nucleus | 15.44 | 16.41 |
| Os03t0437200-01 | Rice | cytosol, nucleus, vacuole | 13.24 | 16.36 |
| HORVU2Hr1G014870.1 | Barley | nucleus | 12.87 | 16.2 |
| CDY50966 | Canola | nucleus | 17.28 | 12.6 |
| HORVU3Hr1G028100.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 8.82 | 12.06 |
| CDY28108 | Canola | nucleus | 17.65 | 10.64 |
Protein Annotations
| EnsemblPlants:CDY02142 | EnsemblPlantsGene:GSBRNA2T00113539001 | Gene3D:3.30.160.60 | GO:A0A078ELZ3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF322 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY02142 | ProteinID:CDY02142.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EEF7E1 | MapMan:15.5.15 | : | : |
Description
BnaA03g40250D
Coordinates
chrLK031932:-:341046..341864
Molecular Weight (calculated)
30360.0 Da
IEP (calculated)
8.052
GRAVY (calculated)
-0.740
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MMYSLLNETR NCQVCKKSFP NGRALGGHMR SHTRKISASN AESATGSTVP TLKTLTKLAA NIRPNETVLM RSVHASEVGP EPDLKRGEGG QQIKGKRKFV
101: VDVDECPSSL TAVEECALCL VAMSKGQRPE NSQNWNAIDR LLATPNEKEE YTRKSIDIDS DDDDKDKYVA SNVRVLTKDI DENEDEDDDD ETYLVEKENQ
201: CKKKFTCDIC GKVLHSYQAL GGHRTSHKTK RLKICDKNGQ AMVRNYKCEI CGRVFGSGQA LGGHKKVHYV FL
101: VDVDECPSSL TAVEECALCL VAMSKGQRPE NSQNWNAIDR LLATPNEKEE YTRKSIDIDS DDDDKDKYVA SNVRVLTKDI DENEDEDDDD ETYLVEKENQ
201: CKKKFTCDIC GKVLHSYQAL GGHRTSHKTK RLKICDKNGQ AMVRNYKCEI CGRVFGSGQA LGGHKKVHYV FL
001: MYSLLKKTKI CQVCKKSFSN GKALGGHMRA HTLKFFPGSS SSTGSITPSL RSCNNLGASF RRPNETVLAR FVHTSEVVGG PKPDLNKEAE QRTTVKKKIV
101: VDLEEENSIE SESDITIEES ALCLLQMKDD NMSEYLQNLK SIDSLVSTRK RKDTENYIEI DSDENHEDSD DEYVVEDEDE DNEDDDVKSL TSDVENLIGD
201: SDEDDDDYGD ENAYYGGKRK RGKKQSKYTC DTCGKVLRSY QALGGHRTSH KYKRLKISDK NYFGEDGPIV RRQYECQICN RMFASGQALG GHKKIHYMFL
301: APAK
101: VDLEEENSIE SESDITIEES ALCLLQMKDD NMSEYLQNLK SIDSLVSTRK RKDTENYIEI DSDENHEDSD DEYVVEDEDE DNEDDDVKSL TSDVENLIGD
201: SDEDDDDYGD ENAYYGGKRK RGKKQSKYTC DTCGKVLRSY QALGGHRTSH KYKRLKISDK NYFGEDGPIV RRQYECQICN RMFASGQALG GHKKIHYMFL
301: APAK
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9FII6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.