Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37027 | Canola | nucleus | 93.33 | 94.66 |
| CDX83402 | Canola | nucleus | 76.14 | 72.82 |
| CDX95629 | Canola | nucleus | 69.82 | 72.63 |
| AT2G45120.1 | Thale cress | nucleus | 72.98 | 66.24 |
| CDY71582 | Canola | nucleus | 59.3 | 62.13 |
| CDY41155 | Canola | nucleus | 51.93 | 59.68 |
| CDX67836 | Canola | nucleus | 61.05 | 58.98 |
| CDX89061 | Canola | nucleus | 54.04 | 58.56 |
| CDY48363 | Canola | nucleus | 57.89 | 57.49 |
| CDX71799 | Canola | nucleus | 52.28 | 57.31 |
| PGSC0003DMT400053945 | Potato | cytosol | 24.56 | 45.75 |
| Solyc01g090840.2.1 | Tomato | nucleus | 45.61 | 40.25 |
| PGSC0003DMT400066939 | Potato | nucleus | 46.32 | 40.0 |
| KRH76140 | Soybean | nucleus | 50.88 | 39.73 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 49.12 | 39.0 |
| KRH65408 | Soybean | nucleus | 50.53 | 37.11 |
| CDY09671 | Canola | nucleus | 25.96 | 37.0 |
| CDY53641 | Canola | nucleus | 26.67 | 36.36 |
| CDY50848 | Canola | nucleus | 26.67 | 36.36 |
| CDY02102 | Canola | nucleus | 20.0 | 36.08 |
| KRH75355 | Soybean | nucleus | 48.77 | 35.73 |
| CDY69391 | Canola | nucleus | 26.32 | 35.05 |
| CDY22361 | Canola | nucleus | 22.46 | 34.59 |
| CDY40527 | Canola | nucleus | 23.51 | 34.54 |
| CDY32274 | Canola | nucleus | 23.86 | 34.52 |
| CDY30794 | Canola | nucleus | 22.46 | 33.86 |
| CDY23027 | Canola | nucleus | 20.0 | 33.53 |
| CDX81313 | Canola | nucleus | 21.75 | 33.33 |
| CDY43576 | Canola | nucleus | 22.11 | 30.14 |
| CDY18661 | Canola | nucleus | 21.75 | 29.95 |
| CDY37851 | Canola | nucleus | 22.11 | 29.3 |
| CDY03945 | Canola | nucleus | 23.51 | 29.0 |
| CDX83103 | Canola | nucleus | 22.46 | 28.83 |
| CDY11770 | Canola | nucleus | 23.51 | 28.76 |
| CDX90105 | Canola | nucleus | 23.51 | 28.76 |
| CDY51312 | Canola | nucleus | 22.11 | 28.64 |
| CDX84907 | Canola | nucleus | 22.81 | 28.38 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 25.61 | 28.29 |
| CDY46162 | Canola | nucleus | 26.32 | 28.09 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 26.67 | 28.04 |
| CDX68559 | Canola | nucleus | 22.11 | 28.0 |
| CDY27629 | Canola | nucleus | 22.46 | 27.95 |
| CDX68558 | Canola | nucleus | 21.75 | 27.93 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 27.02 | 27.9 |
| CDX99202 | Canola | nucleus | 25.96 | 27.82 |
| CDX70236 | Canola | nucleus, plastid | 22.11 | 27.63 |
| CDX95435 | Canola | nucleus | 25.26 | 27.59 |
| CDY36493 | Canola | nucleus | 22.81 | 26.97 |
| CDY42192 | Canola | nucleus | 24.91 | 26.89 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 30.53 | 26.61 |
| CDY65161 | Canola | nucleus | 24.91 | 26.49 |
| CDY08718 | Canola | nucleus | 22.11 | 26.14 |
| CDX82290 | Canola | nucleus | 24.56 | 26.02 |
| CDY02142 | Canola | nucleus | 24.21 | 25.37 |
| CDY23066 | Canola | plastid | 24.21 | 25.09 |
| CDY42873 | Canola | nucleus | 21.75 | 24.9 |
| CDY70162 | Canola | nucleus | 16.84 | 22.43 |
| CDY50966 | Canola | nucleus | 21.75 | 16.62 |
| CDY28108 | Canola | nucleus | 22.46 | 14.19 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078GQB2 | UniProt:A0A078GQB2 | EnsemblPlants:CDY27394 | ProteinID:CDY27394 |
| ProteinID:CDY27394.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00037343001 |
| InterPro:IPR013087 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EE2AB2 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
BnaC04g50110DBnaC04g50110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQB2]
Coordinates
chrLK032203:-:465059..466148
Molecular Weight (calculated)
32484.7 Da
IEP (calculated)
6.789
GRAVY (calculated)
-1.092
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MERYKCRFCL KSFINGSALG GHMRSHMLTL SSEREERPSQ LSEETESDAS SSSSSDDKKE MEFGFSESET ESSRINPTRK RSKRTRKLGS FGFDFKKVKT
101: SQLGETEHHH SSASDTTTEE DLAFCLIMLS RDKWKQQNKT KQTLVEEEEE EEEDDESDHE CKNRGGGGRG RFKCETCGKA FKSYQALGGH RASHRKNKTF
201: TKTEHEEKTE YSVNEEKKIH QCPICLRVFT SGQALGGHKR SHGINNIVSG RVPKEEVSVK QRMIDLNLPA PNEDVETSVV VFDEW
101: SQLGETEHHH SSASDTTTEE DLAFCLIMLS RDKWKQQNKT KQTLVEEEEE EEEDDESDHE CKNRGGGGRG RFKCETCGKA FKSYQALGGH RASHRKNKTF
201: TKTEHEEKTE YSVNEEKKIH QCPICLRVFT SGQALGGHKR SHGINNIVSG RVPKEEVSVK QRMIDLNLPA PNEDVETSVV VFDEW
001: MERYKCRFCF KSFINGRALG GHMRSHMLTL SAERCVITGE AEEEVEERPS QLCDDDDDTE SDASSSSGEF DNQKMNRLDD ELEFDFAEDD DVESETESSR
101: INPTRRRSKR TRKLGSFDFD FEKLTTSQPS ELVAEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKKK QRVEEDETDH DSEDYKSSKS RGRFKCETCG
201: KVFKSYQALG GHRASHKKNK ACMTKTEQVE TEYVLGVKEK KVHECPICFR VFTSGQALGG HKRSHGSNIG AGRGLSVSQI VQIEEEVSVK QRMIDLNLPA
301: PNEEDETSLV FDEW
101: INPTRRRSKR TRKLGSFDFD FEKLTTSQPS ELVAEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKKK QRVEEDETDH DSEDYKSSKS RGRFKCETCG
201: KVFKSYQALG GHRASHKKNK ACMTKTEQVE TEYVLGVKEK KVHECPICFR VFTSGQALGG HKRSHGSNIG AGRGLSVSQI VQIEEEVSVK QRMIDLNLPA
301: PNEEDETSLV FDEW
Arabidopsis Description
ZAT4Zinc finger protein ZAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.