Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22470_001 | |
| GSMUA_Achr4P16460_001 | |
| GSMUA_Achr8P30950_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | GSMUA_Achr1P22470_001 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | GSMUA_Achr4P16460_001 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | GSMUA_Achr8P30950_001 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 54.35 | 55.35 |
| GSMUA_Achr4P12160_001 | Banana | mitochondrion | 29.35 | 41.54 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 44.57 | 37.61 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 28.26 | 33.91 |
| PGSC0003DMT400053945 | Potato | cytosol | 18.48 | 33.33 |
| AT1G02030.1 | Thale cress | nucleus | 30.07 | 31.09 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 28.99 | 31.01 |
| GSMUA_Achr5P15450_001 | Banana | mitochondrion | 30.07 | 29.96 |
| CDY41155 | Canola | nucleus | 26.45 | 29.44 |
| GSMUA_Achr5P13370_001 | Banana | mitochondrion, nucleus | 31.16 | 29.05 |
| GSMUA_Achr4P26920_001 | Banana | mitochondrion | 28.62 | 28.94 |
| CDX95629 | Canola | nucleus | 28.62 | 28.83 |
| CDY71582 | Canola | nucleus | 28.26 | 28.68 |
| CDX71799 | Canola | nucleus | 26.81 | 28.46 |
| GSMUA_Achr4P05560_001 | Banana | nucleus | 23.19 | 27.83 |
| Bra040325.1-P | Field mustard | nucleus | 28.26 | 27.76 |
| CDY37027 | Canola | nucleus | 28.26 | 27.76 |
| GSMUA_Achr1P01550_001 | Banana | nucleus | 28.99 | 27.21 |
| CDX83402 | Canola | nucleus | 29.35 | 27.18 |
| CDY27394 | Canola | nucleus | 27.9 | 27.02 |
| CDX89061 | Canola | nucleus | 25.72 | 27.0 |
| GSMUA_Achr2P18480_001 | Banana | nucleus | 23.91 | 26.94 |
| AT3G60580.1 | Thale cress | nucleus | 27.9 | 26.74 |
| Bra000372.1-P | Field mustard | mitochondrion, nucleus | 29.71 | 26.45 |
| CDX67836 | Canola | nucleus | 28.26 | 26.44 |
| Bra003422.1-P | Field mustard | nucleus | 28.26 | 26.26 |
| CDY48363 | Canola | nucleus | 27.17 | 26.13 |
| Bra007545.1-P | Field mustard | nucleus | 27.54 | 25.59 |
| AT2G45120.1 | Thale cress | nucleus | 28.62 | 25.16 |
| Solyc01g090840.2.1 | Tomato | nucleus | 29.35 | 25.08 |
| PGSC0003DMT400066939 | Potato | nucleus | 29.71 | 24.85 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 30.8 | 23.68 |
| KRH76140 | Soybean | nucleus | 30.43 | 23.01 |
| GSMUA_Achr1P24150_001 | Banana | mitochondrion | 22.1 | 22.93 |
| Bra014483.1-P | Field mustard | nucleus | 20.65 | 22.35 |
| GSMUA_Achr4P28230_001 | Banana | nucleus | 17.03 | 21.96 |
| KRH65408 | Soybean | nucleus | 30.07 | 21.39 |
| KRH75355 | Soybean | nucleus | 29.35 | 20.82 |
| GSMUA_Achr5P01720_001 | Banana | nucleus | 17.03 | 20.61 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 27.17 | 20.33 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 17.39 | 19.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.58 | 18.86 |
| GSMUA_Achr2P13410_001 | Banana | nucleus | 15.94 | 18.11 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 17.75 | 17.75 |
| GSMUA_Achr9P26580_001 | Banana | nucleus | 13.04 | 17.22 |
| GSMUA_Achr7P04600_001 | Banana | nucleus | 13.41 | 10.25 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P09370_001 | EnsemblPlants:GSMUA_Achr9T09370_001 | EnsemblPlantsGene:GSMUA_Achr9G09370_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00029698B0 |
| UniProt:M0TYU6 | MapMan:15.5.15 | : | : | : | : |
Description
Putative PR domain zinc finger protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr9G09370_001]
Coordinates
chr9:+:6123451..6124725
Molecular Weight (calculated)
30199.6 Da
IEP (calculated)
9.044
GRAVY (calculated)
-0.696
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGDRLTPAP GLLPLSKHRC KVCSRSFPSG RSLGGHMRSH VNVQCKECGK EFLSWRALFG HMRCHSERPY EERGERDGSC SNAGHCNSLE NQFDSEAAAA
101: TPEDEDGAIS LVLLSKGQDL SSAVTEPSMK PGFDASGVRL GKNSSSTLER SDGCSDKTTK KRSWFDCKPC NKVFRSYQAL GGHRARHKRM KGCHGHRLHG
201: STKGHRCPIC SKFFSSGQAL GGHKRSHLVA NTACPVVIPR QPFKMSQLLD LNLPANGSDD YGGRESTSST SYCFIH
101: TPEDEDGAIS LVLLSKGQDL SSAVTEPSMK PGFDASGVRL GKNSSSTLER SDGCSDKTTK KRSWFDCKPC NKVFRSYQAL GGHRARHKRM KGCHGHRLHG
201: STKGHRCPIC SKFFSSGQAL GGHKRSHLVA NTACPVVIPR QPFKMSQLLD LNLPANGSDD YGGRESTSST SYCFIH
001: MEERHKCKLC WKSFANGRAL GGHMRSHMLI HPLPSQPESY SSSMADPGFV LQDRESETES SKKPSRKRSR LNRRSISSLR HQQSNEEGKS ETARAADIKI
101: GVQELSESCT EQEPMSSVSD AATTEEDVAL SLMLLSRDKW EKEEEESDEE RWKKKRNKWF ECETCEKVFK SYQALGGHRA SHKKKIAETD QLGSDELKKK
201: KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR RSGIIISLID LNLPAPSEEE EMASSVF
101: GVQELSESCT EQEPMSSVSD AATTEEDVAL SLMLLSRDKW EKEEEESDEE RWKKKRNKWF ECETCEKVFK SYQALGGHRA SHKKKIAETD QLGSDELKKK
201: KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR RSGIIISLID LNLPAPSEEE EMASSVF
Arabidopsis Description
ZAT1Zinc finger protein ZAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q39092]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.