Factsheet for GSMUA_Achr2P18480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	47.76	50.87
GSMUA_Achr4P26920_001	Banana	mitochondrion	48.57	43.59
GSMUA_Achr4P12160_001	Banana	mitochondrion	33.47	42.05
GSMUA_Achr5P15450_001	Banana	mitochondrion	46.94	41.52
GSMUA_Achr1P01550_001	Banana	nucleus	48.16	40.14
KRH57408	Soybean	nucleus	42.86	39.62
KRH04135	Soybean	nucleus	41.63	38.78
KRH28087	Soybean	nucleus	44.9	38.19
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	45.71	37.84
KRH77360	Soybean	nucleus	44.9	36.91
CDY40527	Canola	nucleus	28.16	35.57
CDY32274	Canola	nucleus	28.57	35.53
CDY09671	Canola	nucleus	28.16	34.5
VIT_00s0229g00050.t01	Wine grape	nucleus	45.31	34.37
GSMUA_Achr4P05560_001	Banana	nucleus	31.02	33.04
CDY53641	Canola	nucleus	28.16	33.01
CDY50848	Canola	nucleus	28.16	33.01
Bra040741.1-P	Field mustard	nucleus	28.16	33.01
AT4G16610.1	Thale cress	nucleus	27.35	32.84
PGSC0003DMT400030986	Potato	nucleus	40.41	32.46
CDY69391	Canola	nucleus	28.16	32.24
Solyc06g060740.1.1	Tomato	nucleus	40.0	32.03
Bra012701.1-P	Field mustard	nucleus, plastid	27.76	31.78
GSMUA_Achr1P24150_001	Banana	mitochondrion	33.88	31.2
PGSC0003DMT400012154	Potato	nucleus	35.92	29.53
Solyc08g078590.1.1	Tomato	nucleus	33.47	29.18
GSMUA_Achr4P03310_001	Banana	nucleus	28.57	27.13
GSMUA_Achr6P34890_001	Banana	nucleus, plastid	29.8	26.94
KRH39952	Soybean	nucleus	32.65	26.14
GSMUA_Achr4P32760_001	Banana	nucleus	32.24	24.16
GSMUA_Achr9P09370_001	Banana	nucleus	26.94	23.91
GSMUA_Achr4P28230_001	Banana	nucleus	20.41	23.36
GSMUA_AchrUn_...	Banana	mitochondrion	34.69	23.04
GSMUA_Achr5P01720_001	Banana	nucleus	20.41	21.93
GSMUA_Achr2P13410_001	Banana	nucleus	21.63	21.81
GSMUA_AchrUn_...	Banana	nucleus	20.0	21.49
GSMUA_Achr9P26580_001	Banana	nucleus	16.73	19.62
GSMUA_Achr5P08730_001	Banana	nucleus	19.18	19.03
Bra038491.1-P	Field mustard	nucleus	28.57	17.99
GSMUA_Achr6P24730_001	Banana	nucleus	17.55	15.58
GSMUA_Achr7P04600_001	Banana	nucleus	22.04	14.96

Protein Annotations

EnsemblPlants:GSMUA_Achr2P18480_001	EnsemblPlants:GSMUA_Achr2T18480_001	EnsemblPlantsGene:GSMUA_Achr2G18480_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185	PFAM:PF13912
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000295C11C
UniProt:M0S939	MapMan:15.5.15	:	:	:	:

Description

Putative ZOS10-07 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G18480_001]

Coordinates

chr2:+:18876471..18877376

Molecular Weight (calculated)

26911.4 Da

IEP (calculated)

8.668

GRAVY (calculated)

-0.681

Length

245 amino acids

Sequence
(BLAST)

001: MEKHKCRICF RRFPSGRALG GHMRSHGKLT EQASCGLRVK GRKRSRLEDP ESSSAFAAVG STYAVVEDGE SETDANHRCR SKRARHAYSR PEPASSASDV
101: TTEEDVALCL MMLSRDSWIS GDVEEGNVRR ITSRSRPPRR RRSRFQCGKC KKRTDGDDDF EADADAKVFE CPFCLRVFAS GQALGGHKRS HLTSSAATTM
201: TTTSDHAKFN RALGVIDLNL PAPADDDVAL SAASDTEFIV NHTAS

Best Arabidopsis Sequence Match ( AT4G16610.1 )
(BLAST)

001: MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSARKKLG DSVYSSSSSS SDGKALAYGL RENPRKSFRV FNPDPESSTI YNSETETEPE SGDPVKKRVR
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:O23504]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.