CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57408	Soybean	nucleus	83.65	83.02
KRH28087	Soybean	nucleus	63.88	58.33
KRH77360	Soybean	nucleus	64.64	57.05
CDY09671	Canola	nucleus	33.08	43.5
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	38.02	43.48
Bra040741.1-P	Field mustard	nucleus	34.22	43.06
CDY53641	Canola	nucleus	34.22	43.06
CDY50848	Canola	nucleus	33.84	42.58
CDY40527	Canola	nucleus	31.18	42.27
GSMUA_Achr4P26920_001	Banana	mitochondrion	43.73	42.12
GSMUA_Achr2P18480_001	Banana	nucleus	38.78	41.63
CDY32274	Canola	nucleus	31.18	41.62
GSMUA_Achr4P12160_001	Banana	mitochondrion	30.42	41.03
AT4G16610.1	Thale cress	nucleus	31.56	40.69
CDY69391	Canola	nucleus	33.08	40.65
PGSC0003DMT400030986	Potato	nucleus	46.77	40.33
VIT_00s0229g00050.t01	Wine grape	nucleus	49.43	40.25
Bra012701.1-P	Field mustard	nucleus, plastid	32.7	40.19
GSMUA_Achr5P15450_001	Banana	mitochondrion	42.21	40.07
Solyc06g060740.1.1	Tomato	nucleus	46.39	39.87
PGSC0003DMT400012154	Potato	nucleus	44.87	39.6
Solyc08g078590.1.1	Tomato	nucleus	41.83	39.15
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	43.35	38.51
GSMUA_Achr1P01550_001	Banana	nucleus	41.06	36.73
KRH76140	Soybean	nucleus	49.05	35.34
Zm00001d002731_P001	Maize	nucleus	41.06	35.18
TraesCS2A01G413100.1	Wheat	nucleus	38.78	34.69
TraesCS6A01G248700.1	Wheat	nucleus	40.3	33.76
KRH75355	Soybean	nucleus	49.81	33.68
HORVU2Hr1G097410.1	Barley	nucleus	37.64	33.67
HORVU6Hr1G063280.1	Barley	mitochondrion, nucleus, plastid	39.92	33.55
KRH65408	Soybean	nucleus	49.43	33.51
TraesCS6B01G276100.1	Wheat	nucleus	39.92	33.44
HORVU0Hr1G030680.1	Barley	nucleus	39.54	33.23
TraesCS6D01G230800.1	Wheat	nucleus	39.54	33.02
TraesCS1A01G211800.1	Wheat	nucleus	41.83	32.93
TraesCS2D01G410300.1	Wheat	nucleus	38.4	32.9
GSMUA_Achr1P24150_001	Banana	mitochondrion	33.08	32.71
GSMUA_Achr4P05560_001	Banana	nucleus	28.52	32.61
EES11238	Sorghum	mitochondrion	41.06	32.43
TraesCS2B01G431800.1	Wheat	nucleus	38.02	32.36
Zm00001d047102_P001	Maize	nucleus	41.83	32.35
TraesCS1D01G214900.1	Wheat	nucleus	41.83	32.26
TraesCS1B01G225500.1	Wheat	nucleus	41.44	31.96
HORVU1Hr1G054170.1	Barley	nucleus	41.44	31.78
Zm00001d029917_P001	Maize	nucleus	40.3	31.09
HORVU2Hr1G097440.1	Barley	mitochondrion	25.1	30.28
Os10t0555300-01	Rice	mitochondrion, nucleus	41.06	30.08
OQU85696	Sorghum	mitochondrion	38.4	29.97
KRH39952	Soybean	nucleus	34.6	29.74
Os02t0659500-01	Rice	mitochondrion	37.64	29.03
Zm00001d051371_P001	Maize	mitochondrion	36.5	28.32
Zm00001d017497_P001	Maize	mitochondrion	33.46	27.85
EER91950	Sorghum	mitochondrion, plastid	40.68	27.72
GSMUA_AchrUn_...	Banana	nucleus	23.19	26.75
KRH52082	Soybean	nucleus	23.57	26.61
KRH05601	Soybean	nucleus	23.19	25.42
KRH15443	Soybean	nucleus	22.43	25.32
KRH61394	Soybean	nucleus	22.43	25.32
GSMUA_AchrUn_...	Banana	mitochondrion	32.7	23.31
KRG91102	Soybean	nucleus	22.43	22.69
KRH35675	Soybean	nucleus	21.67	22.18
Bra038491.1-P	Field mustard	nucleus	30.42	20.57
GSMUA_Achr7P04600_001	Banana	nucleus	23.19	16.9

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02010383	EnsemblPlantsGene:GLYMA_17G142300	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:I1MV17
InterPro:IPR013087	EnsemblPlants:KRH04135	ProteinID:KRH04135	ProteinID:KRH04135.1	PFAM:PF13912	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000233E957
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:11560146..11561671

Molecular Weight (calculated)

29236.6 Da

IEP (calculated)

9.452

GRAVY (calculated)

-0.783

Length

263 amino acids

Sequence
(BLAST)

001: MDRHKCKLCS RSFSNGRALG GHMKAHLASL PLPLPPKLHS CFSSSDSEQE QSLRENPKKT LRILDPEDRE SETESNKNPT RQRSKRNWKS TMPKLSLGHP
101: EAEPLSSVSD TSPEEDLAMC LMMLSRDTWQ EHKLANAGPP KTRCSSGSEI KLKNKVRSKH LCHACHKSFR SSRALGSHRT LCSPRQEAQN NSIISNNNIK
201: VFECPFCYKL FGSGQALGGH KRSHLIPSSS STVNHSVKLK QSFIDLNLPA PAEDDDLSVV SDA

Best Arabidopsis Sequence Match ( AT2G45120.1 )
(BLAST)

001: MERYKCRFCF KSFINGRALG GHMRSHMLTL SAERCVITGE AEEEVEERPS QLCDDDDDTE SDASSSSGEF DNQKMNRLDD ELEFDFAEDD DVESETESSR
101: INPTRRRSKR TRKLGSFDFD FEKLTTSQPS ELVAEPEHHS SASDTTTEED LAFCLIMLSR DKWKQQKKKK QRVEEDETDH DSEDYKSSKS RGRFKCETCG
201: KVFKSYQALG GHRASHKKNK ACMTKTEQVE TEYVLGVKEK KVHECPICFR VFTSGQALGG HKRSHGSNIG AGRGLSVSQI VQIEEEVSVK QRMIDLNLPA
301: PNEEDETSLV FDEW

Arabidopsis Description

ZAT4Zinc finger protein ZAT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.