CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61394	Soybean	nucleus	92.7	92.7
KRH15443	Soybean	nucleus	63.09	63.09
KRH05601	Soybean	nucleus	60.94	59.17
VIT_03s0091g00690.t01	Wine grape	nucleus	58.37	57.87
KRH35675	Soybean	nucleus	51.93	47.08
KRG91102	Soybean	nucleus	51.5	46.15
TraesCS4A01G236000.1	Wheat	nucleus	39.91	45.59
TraesCS4B01G079000.1	Wheat	nucleus	41.2	43.64
HORVU4Hr1G013460.1	Barley	nucleus	39.91	42.47
TraesCS4D01G077900.1	Wheat	nucleus	39.91	42.47
TraesCS5A01G070600.1	Wheat	nucleus	43.78	42.32
TraesCS5B01G076400.1	Wheat	nucleus	42.92	41.84
TraesCS5D01G082700.1	Wheat	nucleus	42.06	41.18
Os12t0583700-00	Rice	nucleus	42.49	40.08
Os03t0610400-01	Rice	nucleus	39.48	38.66
GSMUA_Achr5P08730_001	Banana	nucleus	37.77	35.63
Zm00001d030858_P001	Maize	nucleus	37.34	31.41
GSMUA_Achr6P24730_001	Banana	nucleus	36.91	31.16
EES16240	Sorghum	nucleus	38.2	30.69
KRH04135	Soybean	nucleus	26.61	23.57
KRH57408	Soybean	nucleus	24.89	21.89
KRH28087	Soybean	nucleus	26.61	21.53
KRH77360	Soybean	nucleus	25.32	19.8
KRH39952	Soybean	nucleus	24.89	18.95
KRH76140	Soybean	nucleus	28.76	18.36
KRH65408	Soybean	nucleus	28.76	17.27
KRH75355	Soybean	nucleus	28.76	17.22

Protein Annotations

EntrezGene:100776038	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02003404	EnsemblPlantsGene:GLYMA_06G045400	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008150	GO:GO:0009719	GO:GO:0010200	UniProt:I0AW24	InterPro:IPR013087	EMBL:JQ692081
EnsemblPlants:KRH52082	ProteinID:KRH52082	ProteinID:KRH52082.1	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR26374	PANTHER:PTHR26374:SF319	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002339E46	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:3452456..3454706

Molecular Weight (calculated)

24942.0 Da

IEP (calculated)

8.490

GRAVY (calculated)

-0.542

Length

233 amino acids

Sequence
(BLAST)

001: MALEALQSPT TATPSFSPFE ETSLSYLETP WTKGKRSKRS RTEQQLQHPS CTEEEYLALC LIMLARGGAG SVSTAKPAVS DNNSAPLSAA KLSYKCSVCN
101: KAFSSYQALG GHKASHRKLA GENHPTSSAV TTSSASNGGG RTHECSICHK TFSTGQALGG HKRCHYEGGN SAVTASEGVG STHTGSHRDF DLNLPAFPDF
201: SARFFVDDEV TSPHPSKKSR FNLTIPKIEI PQY

Best Arabidopsis Sequence Match ( AT1G27730.1 )
(BLAST)

001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL

Arabidopsis Description

ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.