CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH54462
KRH57009
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43170.1	KRH03376	AT1G19050.1	18642946
AT5G43170.1	KRH54462	AT1G19050.1	18642946
AT5G43170.1	KRH57009	AT1G19050.1	18642946
AT5G43170.1	KRH63457	AT1G19050.1	18642946
AT5G43170.1	KRH03376	AT1G74890.1	18642946
AT5G43170.1	KRH54462	AT1G74890.1	18642946
AT5G43170.1	KRH57009	AT1G74890.1	18642946
AT5G43170.1	KRH63457	AT1G74890.1	18642946
AT5G43170.1	KRH03376	AT5G62920.1	18642946
AT5G43170.1	KRH54462	AT5G62920.1	18642946
AT5G43170.1	KRH57009	AT5G62920.1	18642946
AT5G43170.1	KRH63457	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05601	Soybean	nucleus	88.41	85.83
KRH52082	Soybean	nucleus	63.09	63.09
KRH61394	Soybean	nucleus	62.23	62.23
CDY22361	Canola	nucleus	44.64	56.22
Bra033666.1-P	Field mustard	nucleus	43.78	55.14
CDY30794	Canola	nucleus	44.21	54.5
PGSC0003DMT400091896	Potato	nucleus	44.21	54.21
AT5G43170.1	Thale cress	nucleus	43.78	52.85
PGSC0003DMT400055391	Potato	nucleus	42.06	50.78
CDX84907	Canola	nucleus	49.79	50.66
CDY27629	Canola	nucleus	49.79	50.66
Solyc12g088390.1.1	Tomato	nucleus	43.35	50.5
AT1G27730.1	Thale cress	nucleus	48.93	50.22
Bra032845.1-P	Field mustard	nucleus	49.36	50.22
CDY03945	Canola	nucleus	49.79	50.22
Solyc04g077980.1.1	Tomato	nucleus, plastid	55.79	50.0
PGSC0003DMT400030168	Potato	nucleus	44.64	49.76
Bra010922.1-P	Field mustard	nucleus	48.93	48.93
CDX90105	Canola	nucleus	48.93	48.93
CDY11770	Canola	nucleus	48.5	48.5
KRH35675	Soybean	nucleus	52.79	47.86
Bra009464.1-P	Field mustard	plastid	46.35	47.37
CDX70236	Canola	nucleus, plastid	46.35	47.37
TraesCS4A01G236000.1	Wheat	nucleus	40.77	46.57
KRG91102	Soybean	nucleus	51.93	46.54
CDY51312	Canola	nucleus	42.92	45.45
PGSC0003DMT400086329	Potato	nucleus, plastid	44.64	45.02
AT5G04340.1	Thale cress	nucleus	45.92	44.96
TraesCS4D01G077900.1	Wheat	nucleus	41.2	43.84
TraesCS4B01G079000.1	Wheat	nucleus	41.2	43.64
HORVU4Hr1G013460.1	Barley	nucleus	40.34	42.92
PGSC0003DMT400072661	Potato	nucleus	46.35	41.7
Os03t0610400-01	Rice	nucleus	41.63	40.76
TraesCS5B01G076400.1	Wheat	nucleus	41.63	40.59
TraesCS5D01G082700.1	Wheat	nucleus	40.77	39.92
TraesCS5A01G070600.1	Wheat	nucleus	41.2	39.83
GSMUA_Achr5P08730_001	Banana	nucleus	42.06	39.68
PGSC0003DMT400040388	Potato	cytosol	36.05	39.62
PGSC0003DMT400085102	Potato	nucleus	38.2	39.56
PGSC0003DMT400084751	Potato	nucleus	44.21	39.31
PGSC0003DMT400006126	Potato	nucleus	48.07	38.89
PGSC0003DMT400095976	Potato	nucleus	39.06	38.24
Os12t0583700-00	Rice	nucleus	40.34	38.06
PGSC0003DMT400024799	Potato	cytosol	28.76	34.36
Solyc01g107170.2.1	Tomato	nucleus	44.64	33.55
GSMUA_Achr6P24730_001	Banana	nucleus	38.63	32.61
Zm00001d030858_P001	Maize	nucleus	37.77	31.77
EES16240	Sorghum	nucleus	38.63	31.03
KRH04135	Soybean	nucleus	25.32	22.43
KRH57408	Soybean	nucleus	23.61	20.75
KRH28087	Soybean	nucleus	25.32	20.49
KRH39952	Soybean	nucleus	24.89	18.95
KRH77360	Soybean	nucleus	24.03	18.79
KRH75355	Soybean	nucleus	30.04	17.99
KRH76140	Soybean	nucleus	27.9	17.81
KRH65408	Soybean	nucleus	27.9	16.75

Protein Annotations

EntrezGene:100795384	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02008595	EnsemblPlantsGene:GLYMA_14G088300	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008150	GO:GO:0009719	GO:GO:0010200	UniProt:I1M8T1	InterPro:IPR013087	EMBL:JQ743889
EnsemblPlants:KRH15443	ProteinID:KRH15443	ProteinID:KRH15443.1	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR26374	PANTHER:PTHR26374:SF319	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0000E64798	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:7921322..7922418

Molecular Weight (calculated)

25126.2 Da

IEP (calculated)

8.685

GRAVY (calculated)

-0.776

Length

233 amino acids

Sequence
(BLAST)

001: MALETLNSPT TTAPSFPFDD PTIPWAKRKR SKRCSRDHPS EEEYLALCLI MLARGGTTRR VSTPPPQPTP DPSTKLSYKC SVCNKSFPSY QALGGHKASH
101: RKLAASGGED QPTTTSSAAS SANTASGGRT HECSICHKSF PTGQALGGHK RCHYEGNSNG NNNNSNSSVT AASEGVGSTH TVSHGHHRDF DLNIPAFPDF
201: STKVGEDEVE SPHPVMKKPR PFVIPKIEIP QYQ

Best Arabidopsis Sequence Match ( AT1G27730.1 )
(BLAST)

001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL

Arabidopsis Description

ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.