Factsheet for Solyc04g077980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055391	Potato	nucleus	68.46	92.23
PGSC0003DMT400086329	Potato	nucleus, plastid	72.31	81.39
PGSC0003DMT400072661	Potato	nucleus	71.54	71.81
PGSC0003DMT400006126	Potato	nucleus	78.08	70.49
PGSC0003DMT400085102	Potato	nucleus	60.77	70.22
PGSC0003DMT400095976	Potato	nucleus	61.92	67.65
PGSC0003DMT400040388	Potato	cytosol	53.85	66.04
PGSC0003DMT400024799	Potato	cytosol	48.46	64.62
Solyc12g088390.1.1	Tomato	nucleus	48.08	62.5
KRH15443	Soybean	nucleus	50.0	55.79
KRH05601	Soybean	nucleus	50.38	54.58
TraesCS4A01G236000.1	Wheat	nucleus	36.15	46.08
TraesCS4B01G079000.1	Wheat	nucleus	36.92	43.64
HORVU4Hr1G013460.1	Barley	nucleus	36.54	43.38
TraesCS4D01G077900.1	Wheat	nucleus	36.54	43.38
TraesCS5D01G082700.1	Wheat	nucleus	37.69	41.18
TraesCS5B01G076400.1	Wheat	nucleus	37.69	41.0
Os12t0583700-00	Rice	nucleus	38.85	40.89
TraesCS5A01G070600.1	Wheat	nucleus	37.31	40.25
Os03t0610400-01	Rice	nucleus	35.77	39.08
GSMUA_Achr5P08730_001	Banana	nucleus	36.92	38.87
Solyc01g107170.2.1	Tomato	nucleus	42.69	35.81
GSMUA_Achr6P24730_001	Banana	nucleus	36.54	34.42
Zm00001d030858_P001	Maize	nucleus	34.62	32.49
EES16240	Sorghum	nucleus	33.85	30.34
Solyc01g090840.2.1	Tomato	nucleus	27.31	21.98
Solyc08g078590.1.1	Tomato	nucleus	22.31	20.64
Solyc06g060740.1.1	Tomato	nucleus	23.85	20.26

Protein Annotations

MapMan:15.5.15	UniProt:A6ZIC0	EMBL:EF667346	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EMBL:HM061128	InterPro:IPR013087
PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF263	SMART:SM00355
SUPFAM:SSF57667	EnsemblPlantsGene:Solyc04g077980.1	EnsemblPlants:Solyc04g077980.1.1	UniParc:UPI000157B28C	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

C2H2-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:A6ZIC0]

Coordinates

chr4:+:62849956..62850738

Molecular Weight (calculated)

27841.4 Da

IEP (calculated)

8.495

GRAVY (calculated)

-0.714

Length

260 amino acids

Sequence
(BLAST)

001: MALEALNSPT GTTSNPQTFQ FESKGQQQLR YLENWTKGKR SKRSRSMDRQ PTEEEYLALC LIMLARSDGS VNHVRSLPPP VPVMKIHETA EKMLYRCSVC
101: GKGFGSYQAL GGHKASHRKL IAGGDDQSTT STTTNANGTT SSGNGNGNGS GTGRTHECSI CHKCFPTGQA LGGHKRCHYD GGNSNGNGNA NANSSISASV
201: GVTSSEGVGS TISHRDFDLN IPALPEFWPG FGSGEDEVES PHPAKKSRLS LPPKFELFQH

Best Arabidopsis Sequence Match ( AT1G27730.1 )
(BLAST)

001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL

Arabidopsis Description

ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.