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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 5
  • plastid 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400085102 Potato nucleus 73.16 75.11
PGSC0003DMT400072661 Potato nucleus 83.12 74.13
PGSC0003DMT400055391 Potato nucleus 61.04 73.06
Solyc04g077980.1.1 Tomato nucleus, plastid 81.39 72.31
PGSC0003DMT400006126 Potato nucleus 88.31 70.83
PGSC0003DMT400095976 Potato nucleus 70.13 68.07
PGSC0003DMT400024799 Potato cytosol 56.28 66.67
PGSC0003DMT400040388 Potato cytosol 60.17 65.57
PGSC0003DMT400091896 Potato nucleus 44.59 54.21
PGSC0003DMT400030168 Potato nucleus 45.89 50.72
KRH15443 Soybean nucleus 45.02 44.64
KRH05601 Soybean nucleus 45.45 43.75
TraesCS4A01G236000.1 Wheat nucleus 32.47 36.76
TraesCS4D01G077900.1 Wheat nucleus 33.33 35.16
TraesCS4B01G079000.1 Wheat nucleus 33.33 35.0
TraesCS5B01G076400.1 Wheat nucleus 35.93 34.73
TraesCS5D01G082700.1 Wheat nucleus 35.5 34.45
TraesCS5A01G070600.1 Wheat nucleus 35.5 34.02
HORVU4Hr1G013460.1 Barley nucleus 31.6 33.33
Os12t0583700-00 Rice nucleus 34.63 32.39
PGSC0003DMT400084751 Potato nucleus 35.93 31.68
GSMUA_Achr5P08730_001 Banana nucleus 33.77 31.58
Os03t0610400-01 Rice nucleus 31.6 30.67
GSMUA_Achr6P24730_001 Banana nucleus 32.47 27.17
Zm00001d030858_P001 Maize nucleus 31.17 25.99
PGSC0003DMT400053945 Potato cytosol 16.88 25.49
EES16240 Sorghum nucleus 30.3 24.14
PGSC0003DMT400066939 Potato nucleus 26.41 18.48
PGSC0003DMT400030986 Potato nucleus 24.24 18.36
PGSC0003DMT400012154 Potato nucleus 22.94 17.79
Protein Annotations
EnsemblPlants:PGSC0003DMT400086329EnsemblPlantsGene:PGSC0003DMG400035900Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR013087InterPro:Znf_C2H2_sfInterPro:Znf_C2H2_typePANTHER:PTHR26374PANTHER:PTHR26374:SF263PFAM:PF13912
PFscan:PS50157PGSC:PGSC0003DMG400035900ScanProsite:PS00028SEG:segSMART:SM00355SUPFAM:SSF57667
UniParc:UPI000295CAFAUniProt:M1DBH9MapMan:15.5.15:::
Description
Cys2-His2 type zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400035900]
Coordinates
chr3:-:60662293..60663105
Molecular Weight (calculated)
25302.7 Da
IEP (calculated)
8.212
GRAVY (calculated)
-0.704
Length
231 amino acids
Sequence
(BLAST)
001: MALEASNYPT GTSNPQTFQF QSKGQQQLRY LENWTKGERS KRSRSMDRQP TEEEYLVLRL IMLARSDGSV NQVRSLPLPV PVMKIHTPSK KIEEKMLYKC
101: SVCGKGFRSY QALGGHKASH QKLITGGGGG DDQLTTSTTT NATGTTSSCN GNGSGRTHKC LICHKCFPTG QALGGYKRCH YDGDNANSSV STSVRVTEEE
201: DVGSTISHPD FDLNIPVLPE FCPRFGSGED E
Best Arabidopsis Sequence Match ( AT5G04340.1 )
(BLAST)
001: MALETLTSPR LSSPMPTLFQ DSALGFHGSK GKRSKRSRSE FDRQSLTEDE YIALCLMLLA RDGDRNRDLD LPSSSSSPPL LPPLPTPIYK CSVCDKAFSS
101: YQALGGHKAS HRKSFSLTQS AGGDELSTSS AITTSGISGG GGGSVKSHVC SICHKSFATG QALGGHKRCH YEGKNGGGVS SSVSNSEDVG STSHVSSGHR
201: GFDLNIPPIP EFSMVNGDEE VMSPMPAKKL RFDFPEKP
Arabidopsis Description
ZAT6Zinc finger protein ZAT6 [Source:UniProtKB/Swiss-Prot;Acc:O22533]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.