Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400095976 | Potato | nucleus | 96.7 | 86.13 |
| PGSC0003DMT400085102 | Potato | nucleus | 83.49 | 78.67 |
| PGSC0003DMT400024799 | Potato | cytosol | 71.23 | 77.44 |
| PGSC0003DMT400072661 | Potato | nucleus | 87.26 | 71.43 |
| PGSC0003DMT400055391 | Potato | nucleus | 60.38 | 66.32 |
| PGSC0003DMT400006126 | Potato | nucleus | 88.68 | 65.28 |
| PGSC0003DMT400086329 | Potato | nucleus, plastid | 65.57 | 60.17 |
| Solyc04g077980.1.1 | Tomato | nucleus, plastid | 66.04 | 53.85 |
| PGSC0003DMT400091896 | Potato | nucleus | 42.92 | 47.89 |
| PGSC0003DMT400030168 | Potato | nucleus | 40.57 | 41.15 |
| KRH15443 | Soybean | nucleus | 39.62 | 36.05 |
| KRH05601 | Soybean | nucleus | 40.09 | 35.42 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 32.55 | 33.82 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 31.6 | 30.59 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 31.13 | 30.0 |
| Os12t0583700-00 | Rice | nucleus | 34.43 | 29.55 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 33.02 | 29.29 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 33.02 | 29.05 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 32.55 | 28.99 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 29.72 | 28.77 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 33.02 | 28.34 |
| PGSC0003DMT400084751 | Potato | nucleus | 32.55 | 26.34 |
| Os03t0610400-01 | Rice | nucleus | 28.3 | 25.21 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 32.55 | 25.0 |
| PGSC0003DMT400053945 | Potato | cytosol | 16.98 | 23.53 |
| Zm00001d030858_P001 | Maize | nucleus | 30.66 | 23.47 |
| EES16240 | Sorghum | nucleus | 28.77 | 21.03 |
| PGSC0003DMT400066939 | Potato | nucleus | 22.17 | 14.24 |
| PGSC0003DMT400012154 | Potato | nucleus | 19.34 | 13.76 |
| PGSC0003DMT400030986 | Potato | nucleus | 18.87 | 13.11 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400040388 | EnsemblPlantsGene:PGSC0003DMG400015639 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 | PFAM:PF13912 | PGSC:PGSC0003DMG400015639 | ScanProsite:PS00028 |
| SEG:seg | UniParc:UPI00029676E3 | UniProt:M1B9U0 | MapMan:15.5.15 | : | : |
Description
Cys2-His2 type zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015639]
Coordinates
chr7:-:16855604..16856455
Molecular Weight (calculated)
22736.5 Da
IEP (calculated)
4.823
GRAVY (calculated)
-0.478
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQSTEEEY LALCLIMLAR SDGTVSQVCG KGFGSYQALG GHKASHQKLI AGGGGGDDQS TTSTTNATGT TSSGNGNGSG RTHECLICHK CFPTGQALGG
101: HKWCHYDGDN ANSSVSTSVG VTSEKDVGST ISHPDFDLNI LVLPEFCPGF GSGEDEREMS RVCVELMEIE KEVMEEMRDG DDEVKRLLPW TKQITVRNCE
201: IGTRLGKFGS FN
101: HKWCHYDGDN ANSSVSTSVG VTSEKDVGST ISHPDFDLNI LVLPEFCPGF GSGEDEREMS RVCVELMEIE KEVMEEMRDG DDEVKRLLPW TKQITVRNCE
201: IGTRLGKFGS FN
001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
Arabidopsis Description
ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.