Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400040388 | Potato | cytosol | 86.13 | 96.7 |
| PGSC0003DMT400085102 | Potato | nucleus | 86.55 | 91.56 |
| PGSC0003DMT400024799 | Potato | cytosol | 72.69 | 88.72 |
| PGSC0003DMT400055391 | Potato | nucleus | 63.45 | 78.24 |
| PGSC0003DMT400072661 | Potato | nucleus | 81.51 | 74.9 |
| PGSC0003DMT400006126 | Potato | nucleus | 88.24 | 72.92 |
| PGSC0003DMT400086329 | Potato | nucleus, plastid | 68.07 | 70.13 |
| Solyc04g077980.1.1 | Tomato | nucleus, plastid | 67.65 | 61.92 |
| PGSC0003DMT400091896 | Potato | nucleus | 40.76 | 51.05 |
| PGSC0003DMT400030168 | Potato | nucleus | 38.24 | 43.54 |
| KRH15443 | Soybean | nucleus | 38.24 | 39.06 |
| KRH05601 | Soybean | nucleus | 38.66 | 38.33 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 28.99 | 33.82 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 28.15 | 30.59 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 28.15 | 30.45 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 31.09 | 29.96 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 27.31 | 29.68 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 29.41 | 29.29 |
| Os12t0583700-00 | Rice | nucleus | 30.25 | 29.15 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 28.99 | 28.99 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 28.99 | 28.63 |
| PGSC0003DMT400084751 | Potato | nucleus | 31.51 | 28.63 |
| Os03t0610400-01 | Rice | nucleus | 26.89 | 26.89 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 31.09 | 26.81 |
| Zm00001d030858_P001 | Maize | nucleus | 28.15 | 24.19 |
| PGSC0003DMT400053945 | Potato | cytosol | 15.55 | 24.18 |
| EES16240 | Sorghum | nucleus | 26.47 | 21.72 |
| PGSC0003DMT400066939 | Potato | nucleus | 20.59 | 14.85 |
| PGSC0003DMT400012154 | Potato | nucleus | 18.49 | 14.77 |
| PGSC0003DMT400030986 | Potato | nucleus | 18.91 | 14.75 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400095976 | EnsemblPlantsGene:PGSC0003DMG400045547 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 | PFAM:PF13912 |
| PFscan:PS50157 | PGSC:PGSC0003DMG400045547 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI000296E440 | UniProt:M1DXG0 | MapMan:15.5.15 | : | : | : |
Description
C2H2-type zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400045547]
Coordinates
chr10:-:19880197..19881051
Molecular Weight (calculated)
25730.2 Da
IEP (calculated)
5.137
GRAVY (calculated)
-0.491
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQSTEEEY LALCLIMLAR SDGSVSQVRS LPPPVPVMKI HTPSEKMLYK CSVCGKGFGS YQALGGHKTT HQKLIAGGGG GDDQSTTSTT TNATGTTSSG
101: NGNSSGRTHE CLICHKCFPT GQALGGHKWC HYDGDNANSS VSTSVGVTSE EDVGSTINHP DFDLNIPVLP EFCPGFGSGE DEREMSRVCV ELMEIEKEVM
201: EEMRDGDDEV KRLLPWTKQI TVRNCEIGTR LGKFGSFN
101: NGNSSGRTHE CLICHKCFPT GQALGGHKWC HYDGDNANSS VSTSVGVTSE EDVGSTINHP DFDLNIPVLP EFCPGFGSGE DEREMSRVCV ELMEIEKEVM
201: EEMRDGDDEV KRLLPWTKQI TVRNCEIGTR LGKFGSFN
001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
Arabidopsis Description
ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.