Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400055239 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | PGSC0003DMT400055239 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41155 | Canola | nucleus | 48.37 | 29.84 |
| CDX71799 | Canola | nucleus | 45.75 | 26.92 |
| PGSC0003DMT400066939 | Potato | nucleus | 56.86 | 26.36 |
| AT3G60580.1 | Thale cress | nucleus | 49.02 | 26.04 |
| Bra014483.1-P | Field mustard | nucleus | 43.14 | 25.88 |
| Bra007545.1-P | Field mustard | nucleus | 49.67 | 25.59 |
| CDX89061 | Canola | nucleus | 43.79 | 25.48 |
| Bra040325.1-P | Field mustard | nucleus | 46.41 | 25.27 |
| CDY37027 | Canola | nucleus | 46.41 | 25.27 |
| CDY48363 | Canola | nucleus | 47.06 | 25.09 |
| CDY71582 | Canola | nucleus | 44.44 | 25.0 |
| CDY27394 | Canola | nucleus | 45.75 | 24.56 |
| CDX95629 | Canola | nucleus | 43.79 | 24.45 |
| Bra003422.1-P | Field mustard | nucleus | 46.41 | 23.91 |
| CDX83402 | Canola | nucleus | 46.41 | 23.83 |
| CDX67836 | Canola | nucleus | 45.75 | 23.73 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 54.9 | 23.4 |
| Bra000372.1-P | Field mustard | mitochondrion, nucleus | 45.75 | 22.58 |
| KRH76140 | Soybean | nucleus | 51.63 | 21.64 |
| AT2G45120.1 | Thale cress | nucleus | 43.79 | 21.34 |
| PGSC0003DMT400091896 | Potato | nucleus | 26.14 | 21.05 |
| KRH75355 | Soybean | nucleus | 52.29 | 20.57 |
| PGSC0003DMT400030986 | Potato | nucleus | 39.87 | 20.0 |
| KRH65408 | Soybean | nucleus | 50.33 | 19.85 |
| PGSC0003DMT400030168 | Potato | nucleus | 26.8 | 19.62 |
| PGSC0003DMT400055391 | Potato | nucleus | 24.18 | 19.17 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 33.33 | 18.48 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 32.03 | 18.08 |
| PGSC0003DMT400085102 | Potato | nucleus | 25.49 | 17.33 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 36.6 | 17.13 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 28.76 | 17.05 |
| PGSC0003DMT400040388 | Potato | cytosol | 23.53 | 16.98 |
| PGSC0003DMT400086329 | Potato | nucleus, plastid | 25.49 | 16.88 |
| PGSC0003DMT400072661 | Potato | nucleus | 26.8 | 15.83 |
| PGSC0003DMT400012154 | Potato | nucleus | 30.72 | 15.77 |
| PGSC0003DMT400084751 | Potato | nucleus | 26.8 | 15.65 |
| PGSC0003DMT400095976 | Potato | nucleus | 24.18 | 15.55 |
| PGSC0003DMT400006126 | Potato | nucleus | 27.45 | 14.58 |
| PGSC0003DMT400024799 | Potato | cytosol | 17.65 | 13.85 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400053945 | EnsemblPlantsGene:PGSC0003DMG400020929 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 | PFAM:PF13912 |
| PFscan:PS50157 | PGSC:PGSC0003DMG400020929 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI000296E482 | UniProt:M1BVN4 | MapMan:15.5.15 | : | : | : |
Description
C2H2 zinc-finger protein ZPT3-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400020929]
Coordinates
chr10:-:22864649..22865110
Molecular Weight (calculated)
17419.9 Da
IEP (calculated)
9.644
GRAVY (calculated)
-0.631
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MYATAGHVPS SSEPISSISD MSQEEDVAYC LMMLSRDKWT KKRIEVIEDD DEEEEERKNF RVVKMKKTRT RGKYICKTCN RVFRSYQALG GHIASHKKIK
101: VVTSETSKMV ETAKNEVKIH ECSVCYRVFS SGQALGGHKR SHAIASRNSV LLK
101: VVTSETSKMV ETAKNEVKIH ECSVCYRVFS SGQALGGHKR SHAIASRNSV LLK
001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
Arabidopsis Description
ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.