Factsheet for Bra003422.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010606.1-P
Bra011777.1-P
Bra017842.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60580.1	Bra010606.1-P	AT4G37650.1	21245844
AT3G60580.1	Bra011777.1-P	AT4G37650.1	21245844
AT3G60580.1	Bra017842.1-P	AT4G37650.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67836	Canola	nucleus	95.29	95.93
Bra007545.1-P	Field mustard	nucleus	77.44	77.44
AT3G60580.1	Thale cress	nucleus	72.05	74.31
Bra014483.1-P	Field mustard	nucleus	62.63	72.94
Bra040325.1-P	Field mustard	nucleus	57.91	61.21
Bra000372.1-P	Field mustard	mitochondrion, nucleus	55.89	53.55
PGSC0003DMT400053945	Potato	cytosol	23.91	46.41
Solyc01g090840.2.1	Tomato	nucleus	44.11	40.56
PGSC0003DMT400066939	Potato	nucleus	44.78	40.3
Bra040741.1-P	Field mustard	nucleus	26.94	38.28
VIT_15s0021g02720.t01	Wine grape	nucleus	46.13	38.16
KRH76140	Soybean	nucleus	45.79	37.26
Bra012701.1-P	Field mustard	nucleus, plastid	26.6	36.92
KRH65408	Soybean	nucleus	46.8	35.82
KRH75355	Soybean	nucleus	45.45	34.7
Bra033666.1-P	Field mustard	nucleus	21.55	34.59
Bra012914.1-P	Field mustard	nucleus	22.56	31.46
GSMUA_Achr6P34890_001	Banana	nucleus, plastid	28.28	31.0
Bra029985.1-P	Field mustard	nucleus	21.89	29.41
Bra010922.1-P	Field mustard	nucleus	22.56	28.76
GSMUA_Achr4P03310_001	Banana	nucleus	24.92	28.68
Bra009464.1-P	Field mustard	plastid	21.89	28.51
Bra032845.1-P	Field mustard	nucleus	21.89	28.38
GSMUA_Achr9P09370_001	Banana	nucleus	26.26	28.26
GSMUA_Achr4P32760_001	Banana	nucleus	30.98	28.13
Bra038219.1-P	Field mustard	nucleus	24.24	27.27
Bra031834.1-P	Field mustard	nucleus	21.21	26.81
Bra022436.1-P	Field mustard	nucleus	23.91	26.59
Bra001752.1-P	Field mustard	nucleus	23.91	26.59
Bra037845.1-P	Field mustard	nucleus	20.54	26.41
Bra012953.1-P	Field mustard	plastid	24.24	26.18
Bra024448.1-P	Field mustard	nucleus	20.88	25.73
Bra029315.1-P	Field mustard	nucleus	17.51	22.32
Bra038491.1-P	Field mustard	nucleus	25.25	19.28
Bra018817.1-P	Field mustard	nucleus	19.87	15.82

Protein Annotations

EnsemblPlants:Bra003422.1	EnsemblPlants:Bra003422.1-P	EnsemblPlantsGene:Bra003422	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF304
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI00025417F1	UniProt:M4CGT9	MapMan:15.5.15	:	:	:

Description

AT3G60580 (E=4e-090) | zinc finger (C2H2 type) family protein

Coordinates

chrA07:+:13133123..13134016

Molecular Weight (calculated)

33836.4 Da

IEP (calculated)

8.730

GRAVY (calculated)

-1.192

Length

297 amino acids

Sequence
(BLAST)

001: MESYYKCRFC SKSFFNGRAL GGHMRSHMPS LHKFSIQDEE GERASQLNDE TESDVSSSSS EKEEDKRNGL RDNKHPMMED NESETESSRN ITNPTRKRSK
101: RTRKMETFAA KKRKTSQLGY KTEPECEPPQ SSASDTTTEE DLAFCLMLLS RDKWKKKKKN KASSNKEVVE EIETEASEGH NTSSKKGRFT CETCGKVFKS
201: YQALGGHRAS HKKNRVSNKT EQRSETEYPE KRIHECPICL RVFASGQALG GHKRSHGIGN LSVDHHHQVR VDSVKQRTID LNLPAPTDEE EVSVVFQ

Best Arabidopsis Sequence Match ( AT3G60580.1 )
(BLAST)

001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ

Arabidopsis Description

ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.