Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010606.1-P | |
| Bra011777.1-P | |
| Bra017842.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | Bra010606.1-P | AT4G37650.1 | 21245844 |
| AT3G60580.1 | Bra011777.1-P | AT4G37650.1 | 21245844 |
| AT3G60580.1 | Bra017842.1-P | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89061 | Canola | nucleus | 88.63 | 85.93 |
| CDY48363 | Canola | nucleus | 84.31 | 74.91 |
| Bra007545.1-P | Field mustard | nucleus | 76.08 | 65.32 |
| Bra003422.1-P | Field mustard | nucleus | 72.94 | 62.63 |
| AT3G60580.1 | Thale cress | nucleus | 69.41 | 61.46 |
| Bra040325.1-P | Field mustard | nucleus | 53.33 | 48.4 |
| Bra000372.1-P | Field mustard | mitochondrion, nucleus | 52.94 | 43.55 |
| PGSC0003DMT400053945 | Potato | cytosol | 25.88 | 43.14 |
| Solyc01g090840.2.1 | Tomato | nucleus | 39.61 | 31.27 |
| PGSC0003DMT400066939 | Potato | nucleus | 40.0 | 30.91 |
| Bra033666.1-P | Field mustard | nucleus | 22.35 | 30.81 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 41.96 | 29.8 |
| KRH76140 | Soybean | nucleus | 40.39 | 28.22 |
| KRH65408 | Soybean | nucleus | 42.35 | 27.84 |
| KRH75355 | Soybean | nucleus | 41.18 | 26.99 |
| Bra012914.1-P | Field mustard | nucleus | 22.35 | 26.76 |
| Bra040741.1-P | Field mustard | nucleus | 21.57 | 26.32 |
| Bra032845.1-P | Field mustard | nucleus | 23.53 | 26.2 |
| Bra012701.1-P | Field mustard | nucleus, plastid | 21.96 | 26.17 |
| Bra029985.1-P | Field mustard | nucleus | 22.35 | 25.79 |
| Bra010922.1-P | Field mustard | nucleus | 23.53 | 25.75 |
| Bra009464.1-P | Field mustard | plastid | 22.75 | 25.44 |
| Bra038219.1-P | Field mustard | nucleus | 25.88 | 25.0 |
| Bra001752.1-P | Field mustard | nucleus | 25.88 | 24.72 |
| Bra031834.1-P | Field mustard | nucleus | 22.75 | 24.68 |
| Bra037845.1-P | Field mustard | nucleus | 22.35 | 24.68 |
| Bra024448.1-P | Field mustard | nucleus | 22.75 | 24.07 |
| Bra022436.1-P | Field mustard | nucleus | 25.1 | 23.97 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 24.31 | 22.88 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 22.35 | 22.09 |
| Bra029315.1-P | Field mustard | nucleus | 19.61 | 21.46 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 22.35 | 20.65 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 26.27 | 20.49 |
| Bra012953.1-P | Field mustard | plastid | 20.0 | 18.55 |
| Bra018817.1-P | Field mustard | nucleus | 21.57 | 14.75 |
| Bra038491.1-P | Field mustard | nucleus | 20.78 | 13.62 |
Protein Annotations
| EnsemblPlants:Bra014483.1 | EnsemblPlants:Bra014483.1-P | EnsemblPlantsGene:Bra014483 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0002543C0D | UniProt:M4DDB5 | MapMan:15.5.15 | : | : | : |
Description
AT3G60580 (E=2e-068) | zinc finger (C2H2 type) family protein
Coordinates
chrA04:-:927359..928126
Molecular Weight (calculated)
29216.5 Da
IEP (calculated)
10.068
GRAVY (calculated)
-1.073
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSLHNFCIE EEARPSQLSD DSESDVSSSS YSHEVERKRS GLREEKHPTM YDDQRNITNL TRKRSKRTRK LDSFASKKMK TSQLGYKTEP EPPYSSASDT
101: TTEKDLAVCL MMLSRDKWKK KNKTSSSTKE VVEEIDNNSS KMNRATRTKG RFTCETCGKV FKSYQALGGH RASHKKNRVS NKIEYDSVVV VEEKRIHECP
201: ICLRVFTSGQ ALGGHKRSHG LGNLSVNHHQ VRRTESVKQR MLDLNFPAPT EEDKR
101: TTEKDLAVCL MMLSRDKWKK KNKTSSSTKE VVEEIDNNSS KMNRATRTKG RFTCETCGKV FKSYQALGGH RASHKKNRVS NKIEYDSVVV VEEKRIHECP
201: ICLRVFTSGQ ALGGHKRSHG LGNLSVNHHQ VRRTESVKQR MLDLNFPAPT EEDKR
001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
Arabidopsis Description
ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.