Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g092370.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | Solyc02g092370.1.1 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066939 | Potato | nucleus | 91.64 | 89.7 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 52.94 | 47.63 |
| CDY37027 | Canola | nucleus | 40.25 | 46.26 |
| Bra040325.1-P | Field mustard | nucleus | 40.25 | 46.26 |
| CDX95629 | Canola | nucleus | 38.7 | 45.62 |
| CDY27394 | Canola | nucleus | 40.25 | 45.61 |
| CDY71582 | Canola | nucleus | 37.77 | 44.85 |
| CDY41155 | Canola | nucleus | 34.37 | 44.76 |
| CDX71799 | Canola | nucleus | 35.91 | 44.62 |
| AT3G60580.1 | Thale cress | nucleus | 39.63 | 44.44 |
| CDX67836 | Canola | nucleus | 40.56 | 44.41 |
| Bra003422.1-P | Field mustard | nucleus | 40.56 | 44.11 |
| CDX83402 | Canola | nucleus | 40.56 | 43.96 |
| KRH76140 | Soybean | nucleus | 49.54 | 43.84 |
| Bra007545.1-P | Field mustard | nucleus | 39.63 | 43.1 |
| CDX89061 | Canola | nucleus | 34.67 | 42.59 |
| KRH65408 | Soybean | nucleus | 50.46 | 42.01 |
| Bra000372.1-P | Field mustard | mitochondrion, nucleus | 39.94 | 41.61 |
| KRH75355 | Soybean | nucleus | 49.85 | 41.39 |
| AT2G45120.1 | Thale cress | nucleus | 39.32 | 40.45 |
| CDY48363 | Canola | nucleus | 35.29 | 39.72 |
| Bra014483.1-P | Field mustard | nucleus | 31.27 | 39.61 |
| Solyc06g060740.1.1 | Tomato | nucleus | 36.53 | 38.56 |
| Solyc08g078590.1.1 | Tomato | nucleus | 30.34 | 34.88 |
| Solyc12g088390.1.1 | Tomato | nucleus | 20.43 | 33.0 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 26.01 | 32.56 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 25.08 | 29.89 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 25.08 | 29.35 |
| Solyc04g077980.1.1 | Tomato | nucleus, plastid | 21.98 | 27.31 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 27.24 | 26.91 |
| Solyc01g107170.2.1 | Tomato | nucleus | 19.81 | 20.65 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 | UniProt:K4AZ25 | PFAM:PF13912 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 | SMART:SM00355 | SUPFAM:SSF57667 |
| EnsemblPlantsGene:Solyc01g090840.2 | EnsemblPlants:Solyc01g090840.2.1 | UniParc:UPI0002767E1F | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
No Description!
Coordinates
chr1:+:84543317..84545364
Molecular Weight (calculated)
36190.2 Da
IEP (calculated)
6.648
GRAVY (calculated)
-0.821
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKHKICKLC SRKFPNGRAL GGHMRSHMMN LQLHQHETES IPSSSSWSDE EEEKGKILNS SDVDADDSVV VLPDKESETE SSKNPIRFKR SKRVRKSRKP
101: NFMKITEYYS SVVETEPVSS ISENSPEEDV AHCLMMLSRD KWNKNEQVDF YSDEEFKEEN SAEDSGGEVK VTTKSSRGRG KYRCETCNKF FRSYQALGGH
201: RASHKKIKLS NEVIESAAHN NNNNNAVIEE KIHQCPVCYR VFPSGQALGG HKRSHTIGAG VSTSVTVLPP PAPAKLELSR TGGTSLIDLN FPPPMEDDDE
301: IISQVEVSAV SDAEFVNTIN NQR
101: NFMKITEYYS SVVETEPVSS ISENSPEEDV AHCLMMLSRD KWNKNEQVDF YSDEEFKEEN SAEDSGGEVK VTTKSSRGRG KYRCETCNKF FRSYQALGGH
201: RASHKKIKLS NEVIESAAHN NNNNNAVIEE KIHQCPVCYR VFPSGQALGG HKRSHTIGAG VSTSVTVLPP PAPAKLELSR TGGTSLIDLN FPPPMEDDDE
301: IISQVEVSAV SDAEFVNTIN NQR
001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
Arabidopsis Description
ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.