Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400091896 | Potato | nucleus | 88.5 | 93.16 |
| Solyc04g077980.1.1 | Tomato | nucleus, plastid | 62.5 | 48.08 |
| KRH15443 | Soybean | nucleus | 50.5 | 43.35 |
| KRH05601 | Soybean | nucleus | 51.5 | 42.92 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 39.5 | 38.73 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 40.5 | 36.99 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 40.5 | 36.99 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 40.0 | 36.36 |
| Os12t0583700-00 | Rice | nucleus | 43.0 | 34.82 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 41.5 | 34.73 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 41.0 | 34.45 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 41.5 | 34.44 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 42.0 | 34.01 |
| Os03t0610400-01 | Rice | nucleus | 38.5 | 32.35 |
| Solyc01g107170.2.1 | Tomato | nucleus | 46.0 | 29.68 |
| Zm00001d030858_P001 | Maize | nucleus | 38.5 | 27.8 |
| EES16240 | Sorghum | nucleus | 40.0 | 27.59 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 37.5 | 27.17 |
| Solyc01g090840.2.1 | Tomato | nucleus | 33.0 | 20.43 |
| Solyc08g078590.1.1 | Tomato | nucleus | 26.5 | 18.86 |
| Solyc06g060740.1.1 | Tomato | nucleus | 27.5 | 17.97 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR013087 | UniProt:K4DGR0 | PFAM:PF13912 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 | SMART:SM00355 | SUPFAM:SSF57667 |
| EnsemblPlantsGene:Solyc12g088390.1 | EnsemblPlants:Solyc12g088390.1.1 | UniParc:UPI000276AB4F | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg |
Description
No Description!
Coordinates
chr12:+:63797887..63798489
Molecular Weight (calculated)
21888.8 Da
IEP (calculated)
8.495
GRAVY (calculated)
-0.505
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEALNSWT KGKIRSKRSR SIVMEEQPSI ITEEEYLALC LLMLARSNNN NSNSNVSITG DNLYKCSVCG KCFGSYQALG GHKASHRSNR DKVCEQSVIV
101: TSGNVVSGRT HECTICHKTF PSGQALGGHK RRHYEGKMTS SSSSNGVGSV NNFDLNIPVL PDNWPGFASG EDEVESPHPT KKLKQFPSLE LFQTTIGHTL
101: TSGNVVSGRT HECTICHKTF PSGQALGGHK RRHYEGKMTS SSSSNGVGSV NNFDLNIPVL PDNWPGFASG EDEVESPHPT KKLKQFPSLE LFQTTIGHTL
001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
Arabidopsis Description
ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.