Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g113720.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G43170.1 | Solyc03g113720.2.1 | AT1G19050.1 | 18642946 |
| AT5G43170.1 | Solyc03g113720.2.1 | AT1G74890.1 | 18642946 |
| AT5G43170.1 | Solyc03g113720.2.1 | AT5G62920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400084751 | Potato | nucleus | 76.77 | 90.84 |
| CDY22361 | Canola | nucleus | 28.71 | 48.11 |
| CDY30794 | Canola | nucleus | 29.03 | 47.62 |
| Bra033666.1-P | Field mustard | nucleus | 28.06 | 47.03 |
| CDY03945 | Canola | nucleus | 34.52 | 46.32 |
| CDY27629 | Canola | nucleus | 34.19 | 46.29 |
| Solyc12g088390.1.1 | Tomato | nucleus | 29.68 | 46.0 |
| Bra032845.1-P | Field mustard | nucleus | 33.87 | 45.85 |
| CDX84907 | Canola | nucleus | 33.87 | 45.85 |
| Bra010922.1-P | Field mustard | nucleus | 34.19 | 45.49 |
| CDX90105 | Canola | nucleus | 34.19 | 45.49 |
| CDY11770 | Canola | nucleus | 33.55 | 44.64 |
| KRH15443 | Soybean | nucleus | 33.55 | 44.64 |
| AT1G27730.1 | Thale cress | nucleus | 32.58 | 44.49 |
| CDX70236 | Canola | nucleus, plastid | 32.58 | 44.3 |
| Bra009464.1-P | Field mustard | plastid | 32.58 | 44.3 |
| CDY51312 | Canola | nucleus | 30.97 | 43.64 |
| AT5G43170.1 | Thale cress | nucleus | 27.1 | 43.52 |
| KRH05601 | Soybean | nucleus | 33.55 | 43.33 |
| Solyc04g077980.1.1 | Tomato | nucleus, plastid | 35.81 | 42.69 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 27.74 | 42.16 |
| AT5G04340.1 | Thale cress | nucleus | 32.26 | 42.02 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 29.03 | 41.1 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 28.39 | 40.0 |
| Os12t0583700-00 | Rice | nucleus | 30.97 | 38.87 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 27.42 | 38.81 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 28.39 | 36.97 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 28.71 | 36.93 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 28.39 | 36.82 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 28.39 | 35.63 |
| Os03t0610400-01 | Rice | nucleus | 27.1 | 35.29 |
| EES16240 | Sorghum | nucleus | 30.0 | 32.07 |
| Zm00001d030858_P001 | Maize | nucleus | 28.06 | 31.41 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 27.74 | 31.16 |
| Solyc08g078590.1.1 | Tomato | nucleus | 18.39 | 20.28 |
| Solyc01g090840.2.1 | Tomato | nucleus | 20.65 | 19.81 |
| Solyc06g060740.1.1 | Tomato | nucleus | 18.39 | 18.63 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EMBL:HQ738351 | UniProt:I3NN78 | InterPro:IPR013087 |
| PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 | SMART:SM00355 |
| SUPFAM:SSF57667 | EnsemblPlantsGene:Solyc01g107170.2 | EnsemblPlants:Solyc01g107170.2.1 | UniParc:UPI000263A4A5 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
ZF2 [Source:UniProtKB/TrEMBL;Acc:I3NN78]
Coordinates
chr1:+:94787994..94789292
Molecular Weight (calculated)
32929.9 Da
IEP (calculated)
7.534
GRAVY (calculated)
-0.636
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIEALKSPM AAKLSPTVAE LPPLEEIDDD SHNLDSWAKG KRSKRPRIEN PPTRDQYLAL CLLMLANDDG TGFGKGKGNG TGSIGVEQTE KKPAELKPVF
101: IEEKTEQLLK PVVDKEKTEQ LLKPVVVKEK TEQLFRCSEC PKVFTSYQAL GGHKASHRKI NVPATGDDDS NPSTSTSTSG GGVNISALNP SGRSHVCSIC
201: QKAFPTGQAL GGHKRRHYEG KLGGNNRYIG GGGEGGGVHS GSVVTTSDGG SGNGGGGAST PIARDFDLNM PASPGWQLDL TIDCGGRTQH PIEQEVESPM
301: PAKKPRLFFE
101: IEEKTEQLLK PVVDKEKTEQ LLKPVVVKEK TEQLFRCSEC PKVFTSYQAL GGHKASHRKI NVPATGDDDS NPSTSTSTSG GGVNISALNP SGRSHVCSIC
201: QKAFPTGQAL GGHKRRHYEG KLGGNNRYIG GGGEGGGVHS GSVVTTSDGG SGNGGGGAST PIARDFDLNM PASPGWQLDL TIDCGGRTQH PIEQEVESPM
301: PAKKPRLFFE
001: MALEALTSPR LASPIPPLFE DSSVFHGVEH WTKGKRSKRS RSDFHHQNLT EEEYLAFCLM LLARDNRQPP PPPAVEKLSY KCSVCDKTFS SYQALGGHKA
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
101: SHRKNLSQTL SGGGDDHSTS SATTTSAVTT GSGKSHVCTI CNKSFPSGQA LGGHKRCHYE GNNNINTSSV SNSEGAGSTS HVSSSHRGFD LNIPPIPEFS
201: MVNGDDEVMS PMPAKKPRFD FPVKLQL
Arabidopsis Description
ZAT10Zinc finger protein ZAT10 [Source:UniProtKB/Swiss-Prot;Acc:Q96289]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.