Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G236000.1 | Wheat | nucleus | 86.36 | 93.14 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 91.82 | 92.24 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 87.27 | 87.67 |
| Os03t0610400-01 | Rice | nucleus | 73.18 | 67.65 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 60.45 | 55.65 |
| CDY02102 | Canola | nucleus | 32.27 | 44.94 |
| CDY22361 | Canola | nucleus | 36.82 | 43.78 |
| Bra033666.1-P | Field mustard | nucleus | 35.91 | 42.7 |
| CDX81313 | Canola | nucleus | 35.91 | 42.47 |
| CDY23027 | Canola | nucleus | 32.73 | 42.35 |
| CDY30794 | Canola | nucleus | 36.36 | 42.33 |
| PGSC0003DMT400091896 | Potato | nucleus | 36.36 | 42.11 |
| VIT_18s0001g09230.t01 | Wine grape | nucleus | 44.55 | 42.06 |
| VIT_03s0091g00690.t01 | Wine grape | nucleus | 44.09 | 41.28 |
| KRH15443 | Soybean | nucleus | 43.64 | 41.2 |
| KRH52082 | Soybean | nucleus | 43.64 | 41.2 |
| KRH61394 | Soybean | nucleus | 43.64 | 41.2 |
| PGSC0003DMT400030168 | Potato | nucleus | 39.09 | 41.15 |
| AT5G43170.1 | Thale cress | nucleus | 35.91 | 40.93 |
| KRH05601 | Soybean | nucleus | 44.09 | 40.42 |
| CDY43576 | Canola | nucleus | 38.18 | 40.19 |
| Solyc12g088390.1.1 | Tomato | nucleus | 36.36 | 40.0 |
| AT3G49930.1 | Thale cress | nucleus | 39.09 | 40.0 |
| Bra012914.1-P | Field mustard | nucleus | 38.64 | 39.91 |
| Bra029985.1-P | Field mustard | nucleus | 40.0 | 39.82 |
| KRH35675 | Soybean | nucleus | 46.36 | 39.69 |
| CDX83103 | Canola | nucleus | 40.0 | 39.64 |
| CDY18661 | Canola | nucleus | 37.27 | 39.61 |
| CDX70236 | Canola | nucleus, plastid | 40.91 | 39.47 |
| Bra009464.1-P | Field mustard | plastid | 40.91 | 39.47 |
| TraesCS7B01G065700.1 | Wheat | nucleus | 38.18 | 39.44 |
| CDX68558 | Canola | nucleus | 39.55 | 39.19 |
| CDX68559 | Canola | nucleus | 40.0 | 39.11 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 41.36 | 39.06 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 43.64 | 38.87 |
| CDX84907 | Canola | nucleus | 40.45 | 38.86 |
| PGSC0003DMT400055391 | Potato | nucleus | 34.09 | 38.86 |
| KRG91102 | Soybean | nucleus | 45.91 | 38.85 |
| AT1G27730.1 | Thale cress | nucleus | 40.0 | 38.77 |
| CDY51312 | Canola | nucleus | 38.64 | 38.64 |
| CDY03945 | Canola | nucleus | 40.45 | 38.53 |
| CDY27629 | Canola | nucleus | 40.0 | 38.43 |
| Bra032845.1-P | Field mustard | nucleus | 40.0 | 38.43 |
| CDY37851 | Canola | nucleus | 37.27 | 38.14 |
| TraesCS5B01G406000.1 | Wheat | nucleus | 45.0 | 37.93 |
| CDX90105 | Canola | nucleus | 40.0 | 37.77 |
| Bra010922.1-P | Field mustard | nucleus | 40.0 | 37.77 |
| CDY11770 | Canola | nucleus | 40.0 | 37.77 |
| TraesCS2B01G212900.1 | Wheat | nucleus | 37.73 | 37.73 |
| TraesCS2B01G105900.1 | Wheat | nucleus | 34.09 | 37.5 |
| Bra022436.1-P | Field mustard | nucleus | 45.45 | 37.45 |
| CDX99202 | Canola | nucleus | 45.0 | 37.22 |
| Solyc04g077980.1.1 | Tomato | nucleus, plastid | 43.64 | 36.92 |
| CDX95435 | Canola | nucleus | 43.64 | 36.78 |
| CDY46162 | Canola | nucleus | 44.09 | 36.33 |
| AT5G04340.1 | Thale cress | nucleus | 39.09 | 36.13 |
| CDY42192 | Canola | nucleus | 43.18 | 35.98 |
| Bra038219.1-P | Field mustard | nucleus | 43.18 | 35.98 |
| Bra037845.1-P | Field mustard | nucleus | 37.73 | 35.93 |
| CDY65161 | Canola | nucleus | 43.18 | 35.45 |
| Bra001752.1-P | Field mustard | nucleus | 42.73 | 35.21 |
| AT3G19580.1 | Thale cress | nucleus | 43.64 | 35.16 |
| CDX82290 | Canola | nucleus | 42.73 | 34.94 |
| Bra031834.1-P | Field mustard | nucleus | 37.27 | 34.89 |
| Bra024448.1-P | Field mustard | nucleus | 37.27 | 34.02 |
| PGSC0003DMT400084751 | Potato | nucleus | 40.45 | 33.97 |
| CDY08718 | Canola | nucleus | 36.82 | 33.61 |
| CDY36493 | Canola | nucleus | 36.82 | 33.61 |
| AT5G67450.1 | Thale cress | nucleus | 37.27 | 33.47 |
| PGSC0003DMT400086329 | Potato | nucleus, plastid | 35.0 | 33.33 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 39.09 | 31.16 |
| PGSC0003DMT400040388 | Potato | cytosol | 30.0 | 31.13 |
| PGSC0003DMT400072661 | Potato | nucleus | 35.91 | 30.5 |
| PGSC0003DMT400085102 | Potato | nucleus | 30.91 | 30.22 |
| PGSC0003DMT400006126 | Potato | nucleus | 37.27 | 28.47 |
| Solyc01g107170.2.1 | Tomato | nucleus | 40.0 | 28.39 |
| PGSC0003DMT400095976 | Potato | nucleus | 30.45 | 28.15 |
| PGSC0003DMT400024799 | Potato | cytosol | 23.18 | 26.15 |
| TraesCS2B01G431800.1 | Wheat | nucleus | 29.09 | 20.71 |
| TraesCS6B01G276100.1 | Wheat | nucleus | 29.55 | 20.7 |
| TraesCS1B01G225500.1 | Wheat | nucleus | 29.09 | 18.77 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G079000.1 | EnsemblPlantsGene:TraesCS4B01G079000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 | PFAM:PF13912 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr4B:-:76565267..76566134
Molecular Weight (calculated)
23136.3 Da
IEP (calculated)
8.307
GRAVY (calculated)
-0.558
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDAVRDAA AMPSPAVSEE EEGQLRCDEG WGKRRRPRRQ RQRAPSEEEH LALSLLMLAR GHRDRHLLGS SEPAQEHRCS VCGKAFSSYQ ALGGHKASHR
101: PKPAPAGADE PAATTAASPA ASSSTTSSGA GAGAGGGGKV HECSVCKKTF PTGQALGGHK RCHYEGPIGA SAVASRGFDL NLPAMPDIVT ERERCMPAPA
201: DEEEVLSPLA FKKPRLMIPA
101: PKPAPAGADE PAATTAASPA ASSSTTSSGA GAGAGGGGKV HECSVCKKTF PTGQALGGHK RCHYEGPIGA SAVASRGFDL NLPAMPDIVT ERERCMPAPA
201: DEEEVLSPLA FKKPRLMIPA
001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
Arabidopsis Description
At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.