Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02102 | Canola | nucleus | 61.4 | 83.54 |
| Bra012914.1-P | Field mustard | nucleus | 80.0 | 80.75 |
| Bra029985.1-P | Field mustard | nucleus | 82.33 | 80.09 |
| CDX83103 | Canola | nucleus | 81.4 | 78.83 |
| CDX68558 | Canola | nucleus | 80.93 | 78.38 |
| CDX68559 | Canola | nucleus | 81.4 | 77.78 |
| CDY23027 | Canola | nucleus | 60.47 | 76.47 |
| AT5G67450.1 | Thale cress | nucleus | 63.26 | 55.51 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 46.51 | 42.92 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 39.07 | 41.18 |
| AT5G43170.1 | Thale cress | nucleus | 36.74 | 40.93 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 40.93 | 40.18 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 40.47 | 39.73 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 40.0 | 39.09 |
| AT1G27730.1 | Thale cress | nucleus | 40.93 | 38.77 |
| Os03t0610400-01 | Rice | nucleus | 40.93 | 36.97 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 40.47 | 36.4 |
| AT5G04340.1 | Thale cress | nucleus | 39.53 | 35.71 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 39.53 | 35.71 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 39.53 | 35.27 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 40.47 | 35.22 |
| AT3G19580.1 | Thale cress | nucleus | 44.65 | 35.16 |
| Os12t0583700-00 | Rice | nucleus | 37.67 | 32.79 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 35.35 | 27.54 |
| Zm00001d030858_P001 | Maize | nucleus | 35.35 | 27.44 |
| EES16240 | Sorghum | nucleus | 36.28 | 26.9 |
| AT1G02030.1 | Thale cress | nucleus | 28.84 | 23.22 |
| AT3G60580.1 | Thale cress | nucleus | 30.7 | 22.92 |
| AT2G45120.1 | Thale cress | nucleus | 30.23 | 20.7 |
| AT5G61470.1 | Thale cress | nucleus | 23.26 | 16.45 |
| AT4G16610.1 | Thale cress | nucleus | 14.42 | 15.2 |
| AT1G49900.1 | Thale cress | nucleus | 35.35 | 8.29 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:824155 | ProteinID:AEE78608.1 | ArrayExpress:AT3G49930 | EnsemblPlantsGene:AT3G49930 |
| RefSeq:AT3G49930 | TAIR:AT3G49930 | RefSeq:AT3G49930-TAIR-G | EnsemblPlants:AT3G49930.1 | TAIR:AT3G49930.1 | EMBL:BT029377 |
| ProteinID:CAB62101.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0044212 |
| InterPro:IPR013087 | RefSeq:NP_190562.1 | PFAM:PF13912 | PO:PO:0000013 | PO:PO:0000230 | PO:PO:0001054 |
| PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 |
| PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF263 | UniProt:Q9SN24 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000009DC71 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
Coordinates
chr3:+:18510056..18511136
Molecular Weight (calculated)
23307.9 Da
IEP (calculated)
7.342
GRAVY (calculated)
-0.887
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.