Factsheet for AT1G49900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28108	Canola	nucleus	21.05	42.79
Bra018817.1-P	Field mustard	nucleus	17.34	42.63
CDY50966	Canola	nucleus	17.34	42.63
AT5G43170.1	Thale cress	nucleus	8.07	38.34
AT1G27730.1	Thale cress	nucleus	9.38	37.89
AT3G49930.1	Thale cress	nucleus	8.29	35.35
AT5G04340.1	Thale cress	nucleus	8.72	33.61
AT3G19580.1	Thale cress	nucleus	9.92	33.33
AT5G67450.1	Thale cress	nucleus	8.4	31.43
AT1G02030.1	Thale cress	nucleus	7.09	24.34
AT3G60580.1	Thale cress	nucleus	6.98	22.22
AT2G45120.1	Thale cress	nucleus	7.09	20.7
AT5G61470.1	Thale cress	nucleus	5.56	16.78
AT4G16610.1	Thale cress	nucleus	3.49	15.69

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:841413	ProteinID:AAG51770.1	ProteinID:AAG60166.1	ProteinID:AEE32489.1
ArrayExpress:AT1G49900	EnsemblPlantsGene:AT1G49900	RefSeq:AT1G49900	TAIR:AT1G49900	RefSeq:AT1G49900-TAIR-G	EnsemblPlants:AT1G49900.1
TAIR:AT1G49900.1	Unigene:At.38139	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR013087
RefSeq:NP_175412.1	PFAM:PF13912	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF322
UniProt:Q9C538	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00000A0864	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

C2H2 type zinc finger transcription factor family [Source:UniProtKB/TrEMBL;Acc:Q9C538]

Coordinates

chr1:-:18473908..18477643

Molecular Weight (calculated)

102704.0 Da

IEP (calculated)

4.777

GRAVY (calculated)

-0.918

Length

917 amino acids

Sequence
(BLAST)

001: MDLKTLNQFS PLTKLTVPNH RDVQVRTDQL ITYERSKRKS SLHDDEDLIS KRRCLDFQRK IEDNECANDG VFVAPPRFKS GQVSIRQRSD APLSSQAVKH
101: DEFANDAFYK PWLDSFRLKR QRLGDDEDPS SSSSPSEVDI AALTLLQFSC DRRHPQTQTL TRPQPQTHKT QLQRPPPQLQ SQTQTAPPKS DLFKCSICEK
201: VFTSYQALGG HKASHSIKAA QLENAGADAG EKTRSKMLSP SGKIHKCDIC HVLFPTGQAL GGHKRRHYEG LLGGHKRGND EAVLKLSPNS NKSVVTKVLD
301: AEQSLRASDN IHKRNQDEVV PSRDKWSLSN VSVVKNVLDL KLSLGESDGG HKDSQDEVVV HEDKCSPSSN GSIVTNVSDP EQSVRRLIDL NNPPSLEFDQ
401: SRGGDVEEVE KEVVLALSSQ MKQPSKDVSA LIKRLEFAMQ ERKDGLLADD NVLIEMIMEL EGNISTTNGD DEDPYSEGRL IKVIEPIGLD EDDECVEIGL
501: GSCEQEPIQE RFGDDKDPSS DHGNVESIRL EEEDAVLFEP WLKSRLKSRD REQSQRQGFG EYEDCFSERR FLQEEEEECF GDDEDSFSDQ ISFLESNRLE
601: EEFEEEKEAA RFSNDNDFVE LLFQGIEQSK SKPKPKSCSY YDDDDDDDDD GDEDDDDDDD DVDPSSKDIR LEEENECENR AVIRPSLNSV APNQQRFGDD
701: EVPSSSSSLS KDETAALCPT PHSQTQPQSQ TQLQKVTQPQ TQMLPKSDSY QCNVCGRELP SYQALGGHKA SHRTKPPVEN ATGEKMRPKK LAPSGKIHKC
801: SICHREFSTG QSLGGHKRLH YEGVLRGHKR SQEKEAVSQG DKLSPSGNGS VVTHVPDPKQ SRKGLIVINK VPSPEFNDPG DKDILEGESA LLANKLEQDR
901: GITSTRMING LKFFNFL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.