Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G60580.1 | Thale cress | nucleus | 44.94 | 41.67 |
| AT2G45120.1 | Thale cress | nucleus | 45.69 | 38.85 |
| AT4G16610.1 | Thale cress | nucleus | 26.22 | 34.31 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 30.34 | 31.4 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 31.09 | 30.63 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 31.09 | 30.07 |
| AT5G43170.1 | Thale cress | nucleus | 21.35 | 29.53 |
| AT3G49930.1 | Thale cress | nucleus | 23.22 | 28.84 |
| AT1G27730.1 | Thale cress | nucleus | 24.34 | 28.63 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 34.08 | 27.83 |
| AT5G04340.1 | Thale cress | nucleus | 23.97 | 26.89 |
| AT3G19580.1 | Thale cress | nucleus | 25.47 | 24.91 |
| AT5G67450.1 | Thale cress | nucleus | 22.85 | 24.9 |
| AT5G61470.1 | Thale cress | nucleus | 27.72 | 24.34 |
| AT1G49900.1 | Thale cress | nucleus | 24.34 | 7.09 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:839285 | UniProt:A0A178W5D7 | ProteinID:AAC24367.1 | EMBL:AB493421 |
| ProteinID:AEE27369.1 | ArrayExpress:AT1G02030 | EnsemblPlantsGene:AT1G02030 | RefSeq:AT1G02030 | TAIR:AT1G02030 | RefSeq:AT1G02030-TAIR-G |
| EnsemblPlants:AT1G02030.1 | TAIR:AT1G02030.1 | Unigene:At.64820 | ProteinID:CAA67227.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR013087 | RefSeq:NP_171705.1 | ProteinID:OAP13488.1 | PFAM:PF13912 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 | UniProt:Q39092 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI00000A17D3 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
ZAT1Zinc finger protein ZAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q39092]
Coordinates
chr1:-:355124..357258
Molecular Weight (calculated)
30183.4 Da
IEP (calculated)
8.092
GRAVY (calculated)
-0.984
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MEERHKCKLC WKSFANGRAL GGHMRSHMLI HPLPSQPESY SSSMADPGFV LQDRESETES SKKPSRKRSR LNRRSISSLR HQQSNEEGKS ETARAADIKI
101: GVQELSESCT EQEPMSSVSD AATTEEDVAL SLMLLSRDKW EKEEEESDEE RWKKKRNKWF ECETCEKVFK SYQALGGHRA SHKKKIAETD QLGSDELKKK
201: KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR RSGIIISLID LNLPAPSEEE EMASSVF
101: GVQELSESCT EQEPMSSVSD AATTEEDVAL SLMLLSRDKW EKEEEESDEE RWKKKRNKWF ECETCEKVFK SYQALGGHRA SHKKKIAETD QLGSDELKKK
201: KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR RSGIIISLID LNLPAPSEEE EMASSVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.