Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22470_001 | |
| GSMUA_Achr4P16460_001 | |
| GSMUA_Achr8P30950_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | GSMUA_Achr1P22470_001 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | GSMUA_Achr4P16460_001 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | GSMUA_Achr8P30950_001 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P12160_001 | Banana | mitochondrion | 25.19 | 33.33 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 27.91 | 31.3 |
| CDX71799 | Canola | nucleus | 31.4 | 31.15 |
| GSMUA_Achr4P26920_001 | Banana | mitochondrion | 32.56 | 30.77 |
| GSMUA_Achr5P15450_001 | Banana | mitochondrion | 32.95 | 30.69 |
| CDY41155 | Canola | nucleus | 29.46 | 30.65 |
| AT1G02030.1 | Thale cress | nucleus | 31.4 | 30.34 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 30.62 | 29.15 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 31.01 | 28.99 |
| PGSC0003DMT400053945 | Potato | cytosol | 17.05 | 28.76 |
| GSMUA_Achr2P18480_001 | Banana | nucleus | 27.13 | 28.57 |
| CDX95629 | Canola | nucleus | 30.23 | 28.47 |
| AT3G60580.1 | Thale cress | nucleus | 30.62 | 27.43 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 34.5 | 27.22 |
| Bra040325.1-P | Field mustard | nucleus | 29.46 | 27.05 |
| CDY37027 | Canola | nucleus | 29.46 | 27.05 |
| GSMUA_Achr1P01550_001 | Banana | nucleus | 30.62 | 26.87 |
| CDY71582 | Canola | nucleus | 28.29 | 26.84 |
| GSMUA_Achr5P13370_001 | Banana | mitochondrion, nucleus | 30.23 | 26.35 |
| CDX89061 | Canola | nucleus | 26.74 | 26.24 |
| CDX83402 | Canola | nucleus | 30.23 | 26.17 |
| Solyc01g090840.2.1 | Tomato | nucleus | 32.56 | 26.01 |
| Bra007545.1-P | Field mustard | nucleus | 29.84 | 25.93 |
| CDY27394 | Canola | nucleus | 28.29 | 25.61 |
| Bra000372.1-P | Field mustard | mitochondrion, nucleus | 30.23 | 25.16 |
| Bra003422.1-P | Field mustard | nucleus | 28.68 | 24.92 |
| GSMUA_Achr4P05560_001 | Banana | nucleus | 22.09 | 24.78 |
| CDX67836 | Canola | nucleus | 28.29 | 24.75 |
| CDY48363 | Canola | nucleus | 27.52 | 24.74 |
| PGSC0003DMT400066939 | Potato | nucleus | 31.4 | 24.55 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 34.11 | 24.51 |
| KRH76140 | Soybean | nucleus | 34.5 | 24.38 |
| GSMUA_Achr1P24150_001 | Banana | mitochondrion | 24.81 | 24.06 |
| AT2G45120.1 | Thale cress | nucleus | 29.07 | 23.89 |
| GSMUA_Achr4P28230_001 | Banana | nucleus | 18.99 | 22.9 |
| GSMUA_Achr5P01720_001 | Banana | nucleus | 20.16 | 22.81 |
| KRH65408 | Soybean | nucleus | 34.11 | 22.68 |
| Bra014483.1-P | Field mustard | nucleus | 22.09 | 22.35 |
| KRH75355 | Soybean | nucleus | 33.33 | 22.11 |
| GSMUA_Achr2P13410_001 | Banana | nucleus | 19.77 | 20.99 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 27.91 | 19.51 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 18.6 | 19.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.67 | 18.86 |
| GSMUA_Achr9P26580_001 | Banana | nucleus | 13.95 | 17.22 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 18.22 | 17.03 |
| GSMUA_Achr7P04600_001 | Banana | nucleus | 15.89 | 11.36 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P03310_001 | EnsemblPlants:GSMUA_Achr4T03310_001 | EnsemblPlantsGene:GSMUA_Achr4G03310_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF216 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0002968959 | UniProt:M0SKP8 | MapMan:15.5.15 | : | : | : |
Description
Putative ZOS3-10 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G03310_001]
Coordinates
chr4:+:2651827..2653209
Molecular Weight (calculated)
28161.8 Da
IEP (calculated)
5.742
GRAVY (calculated)
-0.614
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTDQQEVKS HMCKVCGRSF PCGRSLGGHM RSHMSLISPL QECGKGHCDG SHSRAAQEEV EDMEQQDQGV DERDGFSETQ SYGEVTEDVA LSLVMLSKGV
101: GSFCSVSSAE DSFDRNLKNR YKCLICNKSF HSYQAFGGHP TKQTDEDSGR RAGTGTGSEA SKKVKEYNCP ICCKVFSSGQ ALGGHKRSHF LPNSNYEGSS
201: ACQQAMVIQQ HPSVMPDMLD LNVPASVDED PKLITDNIEA WWVKSGAEHE PLVSLISN
101: GSFCSVSSAE DSFDRNLKNR YKCLICNKSF HSYQAFGGHP TKQTDEDSGR RAGTGTGSEA SKKVKEYNCP ICCKVFSSGQ ALGGHKRSHF LPNSNYEGSS
201: ACQQAMVIQQ HPSVMPDMLD LNVPASVDED PKLITDNIEA WWVKSGAEHE PLVSLISN
001: MEERHKCKLC WKSFANGRAL GGHMRSHMLI HPLPSQPESY SSSMADPGFV LQDRESETES SKKPSRKRSR LNRRSISSLR HQQSNEEGKS ETARAADIKI
101: GVQELSESCT EQEPMSSVSD AATTEEDVAL SLMLLSRDKW EKEEEESDEE RWKKKRNKWF ECETCEKVFK SYQALGGHRA SHKKKIAETD QLGSDELKKK
201: KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR RSGIIISLID LNLPAPSEEE EMASSVF
101: GVQELSESCT EQEPMSSVSD AATTEEDVAL SLMLLSRDKW EKEEEESDEE RWKKKRNKWF ECETCEKVFK SYQALGGHRA SHKKKIAETD QLGSDELKKK
201: KKKSTSSHHE CPICAKVFTS GQALGGHKRS HASANNEFTR RSGIIISLID LNLPAPSEEE EMASSVF
Arabidopsis Description
ZAT1Zinc finger protein ZAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q39092]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.