Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | CDX72645 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | CDY44032 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | CDY50264 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67836 | Canola | nucleus | 90.07 | 83.05 |
| CDY41155 | Canola | nucleus | 68.38 | 75.0 |
| CDX71799 | Canola | nucleus | 69.12 | 72.31 |
| AT3G60580.1 | Thale cress | nucleus | 75.74 | 71.53 |
| CDX89061 | Canola | nucleus | 68.75 | 71.1 |
| CDY48363 | Canola | nucleus | 73.53 | 69.69 |
| CDY37027 | Canola | nucleus | 62.13 | 60.14 |
| CDY27394 | Canola | nucleus | 62.13 | 59.3 |
| CDX95629 | Canola | nucleus | 56.99 | 56.57 |
| CDX83402 | Canola | nucleus | 60.29 | 55.03 |
| PGSC0003DMT400053945 | Potato | cytosol | 25.0 | 44.44 |
| PGSC0003DMT400066939 | Potato | nucleus | 45.96 | 37.88 |
| Solyc01g090840.2.1 | Tomato | nucleus | 44.85 | 37.77 |
| CDY09671 | Canola | nucleus | 27.21 | 37.0 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 47.43 | 35.93 |
| CDY32274 | Canola | nucleus | 25.74 | 35.53 |
| CDY50848 | Canola | nucleus | 27.21 | 35.41 |
| CDY53641 | Canola | nucleus | 27.21 | 35.41 |
| CDY40527 | Canola | nucleus | 25.0 | 35.05 |
| CDY69391 | Canola | nucleus | 27.57 | 35.05 |
| CDY02102 | Canola | nucleus | 20.22 | 34.81 |
| KRH76140 | Soybean | nucleus | 46.69 | 34.79 |
| CDY22361 | Canola | nucleus | 23.53 | 34.59 |
| KRH65408 | Soybean | nucleus | 47.79 | 33.51 |
| CDY30794 | Canola | nucleus | 23.16 | 33.33 |
| CDY23027 | Canola | nucleus | 20.22 | 32.35 |
| KRH75355 | Soybean | nucleus | 45.96 | 32.13 |
| CDX81313 | Canola | nucleus | 21.32 | 31.18 |
| CDY43576 | Canola | nucleus | 22.43 | 29.19 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 29.04 | 29.15 |
| CDY03945 | Canola | nucleus | 24.63 | 29.0 |
| CDX83103 | Canola | nucleus | 23.16 | 28.38 |
| CDY37851 | Canola | nucleus | 22.43 | 28.37 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 26.84 | 28.29 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 28.68 | 28.26 |
| CDY51312 | Canola | nucleus | 22.79 | 28.18 |
| CDY18661 | Canola | nucleus | 21.32 | 28.02 |
| CDX68559 | Canola | nucleus | 23.16 | 28.0 |
| CDX84907 | Canola | nucleus | 23.53 | 27.95 |
| CDX68558 | Canola | nucleus | 22.79 | 27.93 |
| CDY11770 | Canola | nucleus | 23.9 | 27.9 |
| CDX90105 | Canola | nucleus | 23.9 | 27.9 |
| CDX70236 | Canola | nucleus, plastid | 23.16 | 27.63 |
| CDY27629 | Canola | nucleus | 23.16 | 27.51 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 32.72 | 27.22 |
| CDX95435 | Canola | nucleus | 26.1 | 27.2 |
| CDY02142 | Canola | nucleus | 26.47 | 26.47 |
| CDY23066 | Canola | plastid | 26.47 | 26.18 |
| CDY42192 | Canola | nucleus | 25.37 | 26.14 |
| CDY65161 | Canola | nucleus | 25.74 | 26.12 |
| CDX82290 | Canola | nucleus | 25.37 | 25.65 |
| CDX99202 | Canola | nucleus | 25.0 | 25.56 |
| CDY46162 | Canola | nucleus | 24.63 | 25.09 |
| CDY36493 | Canola | nucleus | 22.06 | 24.9 |
| CDY42873 | Canola | nucleus | 22.43 | 24.5 |
| CDY08718 | Canola | nucleus | 21.69 | 24.48 |
| CDY70162 | Canola | nucleus | 18.38 | 23.36 |
| CDY50966 | Canola | nucleus | 20.96 | 15.28 |
| CDY28108 | Canola | nucleus | 21.32 | 12.86 |
Protein Annotations
| EnsemblPlants:CDY71582 | EnsemblPlantsGene:GSBRNA2T00017422001 | Gene3D:3.30.160.60 | GO:A0A078K114 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF304 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY71582 | ProteinID:CDY71582.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EEBFBD | UniProt:A0A078K114 | MapMan:15.5.15 | : |
Description
BnaCnng73530DBnaCnng73530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K114]
Coordinates
chrLK046481:-:1313..2170
Molecular Weight (calculated)
30938.2 Da
IEP (calculated)
8.896
GRAVY (calculated)
-1.023
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MESYYKCRFC FKSFFNGRAL GGHMRSHMPS LHKFSIQEEE GERASQVNDE TESDVSSSSM MDDDDPKVAN ESETESSRNI TNPTRKRSKR TRKLETFATK
101: KTKASQLGYK TEPECEPPHS SASDTTTDED LAFCLMLLSR DKWMKKKNKA TSEGYTKSSK KGRFTCETCG KVFKSYQALG GHRASHKKNR VSNKTEQRSE
201: TEYPERRIHE CPICLRVFAS GQALGGHKRS HGIGNLSVDH HHQVRVESVK QRMIDLNLPA PTDEEEVSVV FQ
101: KTKASQLGYK TEPECEPPHS SASDTTTDED LAFCLMLLSR DKWMKKKNKA TSEGYTKSSK KGRFTCETCG KVFKSYQALG GHRASHKKNR VSNKTEQRSE
201: TEYPERRIHE CPICLRVFAS GQALGGHKRS HGIGNLSVDH HHQVRVESVK QRMIDLNLPA PTDEEEVSVV FQ
001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ
Arabidopsis Description
ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.