Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68559 | Canola | nucleus | 96.85 | 95.56 |
| Bra029985.1-P | Field mustard | nucleus | 95.05 | 95.48 |
| CDX83103 | Canola | nucleus | 93.69 | 93.69 |
| CDY02102 | Canola | nucleus | 61.26 | 86.08 |
| AT3G49930.1 | Thale cress | nucleus | 78.38 | 80.93 |
| CDY23027 | Canola | nucleus | 60.81 | 79.41 |
| CDX81313 | Canola | nucleus | 54.95 | 65.59 |
| CDY43576 | Canola | nucleus | 60.36 | 64.11 |
| CDY37851 | Canola | nucleus | 61.71 | 63.72 |
| CDY18661 | Canola | nucleus | 57.66 | 61.84 |
| CDY08718 | Canola | nucleus | 59.91 | 55.19 |
| CDY36493 | Canola | nucleus | 58.11 | 53.53 |
| CDY30794 | Canola | nucleus | 39.19 | 46.03 |
| CDY22361 | Canola | nucleus | 38.29 | 45.95 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 44.14 | 42.06 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 38.29 | 41.67 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 40.09 | 40.64 |
| CDX90105 | Canola | nucleus | 42.34 | 40.34 |
| CDY11770 | Canola | nucleus | 42.34 | 40.34 |
| CDX84907 | Canola | nucleus | 41.44 | 40.17 |
| CDY27629 | Canola | nucleus | 40.99 | 39.74 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 39.19 | 39.73 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 39.19 | 39.55 |
| CDY03945 | Canola | nucleus | 40.99 | 39.39 |
| Os03t0610400-01 | Rice | nucleus | 40.54 | 37.82 |
| CDY51312 | Canola | nucleus | 37.39 | 37.73 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 39.64 | 36.82 |
| CDX70236 | Canola | nucleus, plastid | 37.39 | 36.4 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 38.29 | 35.71 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 38.74 | 35.68 |
| CDX95435 | Canola | nucleus | 41.89 | 35.63 |
| CDY65161 | Canola | nucleus | 42.34 | 35.07 |
| CDX99202 | Canola | nucleus | 41.89 | 34.96 |
| CDY42192 | Canola | nucleus | 41.44 | 34.85 |
| CDY46162 | Canola | nucleus | 41.89 | 34.83 |
| CDX82290 | Canola | nucleus | 41.89 | 34.57 |
| Os12t0583700-00 | Rice | nucleus | 37.39 | 33.6 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 37.39 | 33.6 |
| Zm00001d030858_P001 | Maize | nucleus | 35.59 | 28.52 |
| EES16240 | Sorghum | nucleus | 36.04 | 27.59 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 33.78 | 27.17 |
| CDX95629 | Canola | nucleus | 29.73 | 24.09 |
| CDY71582 | Canola | nucleus | 27.93 | 22.79 |
| CDY41155 | Canola | nucleus | 25.23 | 22.58 |
| CDX89061 | Canola | nucleus | 26.58 | 22.43 |
| CDY37027 | Canola | nucleus | 28.38 | 22.42 |
| CDX71799 | Canola | nucleus | 26.13 | 22.31 |
| CDX67836 | Canola | nucleus | 29.28 | 22.03 |
| CDY27394 | Canola | nucleus | 27.93 | 21.75 |
| CDX83402 | Canola | nucleus | 28.38 | 21.14 |
| CDY48363 | Canola | nucleus | 26.13 | 20.21 |
| CDY70162 | Canola | nucleus | 18.47 | 19.16 |
| CDY42873 | Canola | nucleus | 20.72 | 18.47 |
| CDY02142 | Canola | nucleus | 22.52 | 18.38 |
| CDY23066 | Canola | plastid | 22.52 | 18.18 |
| CDY50966 | Canola | nucleus | 29.28 | 17.43 |
| CDY40527 | Canola | nucleus | 13.96 | 15.98 |
| CDY09671 | Canola | nucleus | 13.96 | 15.5 |
| CDY32274 | Canola | nucleus | 13.51 | 15.23 |
| CDY28108 | Canola | nucleus | 30.18 | 14.86 |
| CDY69391 | Canola | nucleus | 13.96 | 14.49 |
| CDY50848 | Canola | nucleus | 13.51 | 14.35 |
| CDY53641 | Canola | nucleus | 13.51 | 14.35 |
Protein Annotations
| EnsemblPlants:CDX68558 | EnsemblPlantsGene:GSBRNA2T00126134001 | GO:A0A078C0C6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 | PFAM:PF13912 |
| PFscan:PS50157 | ProteinID:CDX68558 | ProteinID:CDX68558.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EE7DE2 | MapMan:15.5.15 | : | : | : |
Description
BnaC01g26360D
Coordinates
chrLK031788:+:4098760..4099652
Molecular Weight (calculated)
24084.4 Da
IEP (calculated)
7.223
GRAVY (calculated)
-1.067
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MALDTLNSPN STTTAPSPFL TEPENLEPWT KRKRTKRHRI DDQSNPPSEE EYFALCLLML ARGSSDDDQH SSPPHPPSDH HHRDYKCSVC GKSFPSYQAL
101: GGHKTSHRKP VSNNNNNNHD GHNNSGNGSI TNNGNISNGL IGHSGKTHKC SICFKSFPSG QALGGHKRCH YDGGNGNSNI NGNGSNNHGF DLNLPADQVF
201: EVSCDDTLGK SQLSGEETKS PL
101: GGHKTSHRKP VSNNNNNNHD GHNNSGNGSI TNNGNISNGL IGHSGKTHKC SICFKSFPSG QALGGHKRCH YDGGNGNSNI NGNGSNNHGF DLNLPADQVF
201: EVSCDDTLGK SQLSGEETKS PL
001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
Arabidopsis Description
At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.