Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018817.1-P | Field mustard | nucleus | 98.39 | 98.39 |
| CDY28108 | Canola | nucleus | 90.35 | 74.72 |
| CDX81313 | Canola | nucleus | 17.96 | 36.02 |
| CDY22361 | Canola | nucleus | 17.69 | 35.68 |
| CDY02102 | Canola | nucleus | 15.01 | 35.44 |
| CDY30794 | Canola | nucleus | 17.43 | 34.39 |
| CDY23027 | Canola | nucleus | 15.01 | 32.94 |
| CDY18661 | Canola | nucleus | 18.23 | 32.85 |
| CDY43576 | Canola | nucleus | 18.23 | 32.54 |
| CDY03945 | Canola | nucleus | 20.11 | 32.47 |
| CDX70236 | Canola | nucleus, plastid | 19.84 | 32.46 |
| CDX84907 | Canola | nucleus | 19.84 | 32.31 |
| CDX90105 | Canola | nucleus | 20.11 | 32.19 |
| CDY11770 | Canola | nucleus | 20.11 | 32.19 |
| CDY27629 | Canola | nucleus | 19.57 | 31.88 |
| CDY37851 | Canola | nucleus | 18.23 | 31.63 |
| CDY51312 | Canola | nucleus | 18.23 | 30.91 |
| CDY42192 | Canola | nucleus | 21.18 | 29.92 |
| CDX95435 | Canola | nucleus | 20.91 | 29.89 |
| CDY08718 | Canola | nucleus | 19.3 | 29.88 |
| CDX82290 | Canola | nucleus | 21.45 | 29.74 |
| CDX83103 | Canola | nucleus | 17.69 | 29.73 |
| CDY36493 | Canola | nucleus | 19.03 | 29.46 |
| CDX68558 | Canola | nucleus | 17.43 | 29.28 |
| CDX99202 | Canola | nucleus | 20.64 | 28.95 |
| CDX68559 | Canola | nucleus | 17.43 | 28.89 |
| CDY46162 | Canola | nucleus | 20.64 | 28.84 |
| CDY65161 | Canola | nucleus | 20.64 | 28.73 |
| CDY41155 | Canola | nucleus | 15.55 | 23.39 |
| CDY37027 | Canola | nucleus | 17.43 | 23.13 |
| CDX71799 | Canola | nucleus | 15.82 | 22.69 |
| CDX89061 | Canola | nucleus | 15.55 | 22.05 |
| CDX95629 | Canola | nucleus | 16.09 | 21.9 |
| CDY27394 | Canola | nucleus | 16.62 | 21.75 |
| CDY71582 | Canola | nucleus | 15.28 | 20.96 |
| CDX83402 | Canola | nucleus | 16.62 | 20.81 |
| CDX67836 | Canola | nucleus | 15.82 | 20.0 |
| CDY70162 | Canola | nucleus | 11.26 | 19.63 |
| CDY48363 | Canola | nucleus | 14.75 | 19.16 |
| AT1G49900.1 | Thale cress | nucleus | 42.63 | 17.34 |
| CDY02142 | Canola | nucleus | 12.6 | 17.28 |
| CDY23066 | Canola | plastid | 12.6 | 17.09 |
| CDY42873 | Canola | nucleus | 11.26 | 16.87 |
| CDY09671 | Canola | nucleus | 8.04 | 15.0 |
| CDY50848 | Canola | nucleus | 8.31 | 14.83 |
| CDY53641 | Canola | nucleus | 8.31 | 14.83 |
| CDY69391 | Canola | nucleus | 8.31 | 14.49 |
| CDY40527 | Canola | nucleus | 7.51 | 14.43 |
| CDY32274 | Canola | nucleus | 7.24 | 13.71 |
Protein Annotations
| EnsemblPlants:CDY50966 | EnsemblPlantsGene:GSBRNA2T00097844001 | Gene3D:3.30.160.60 | GO:A0A078ILT1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 |
| PFAM:PF13912 | PFscan:PS50157 | ProteinID:CDY50966 | ProteinID:CDY50966.1 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EEE0FD | UniProt:A0A078ILT1 | MapMan:15.5.15 | : |
Description
BnaA06g37620DBnaA06g37620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILT1]
Coordinates
chrLK032953:-:37078..38301
Molecular Weight (calculated)
41671.9 Da
IEP (calculated)
4.632
GRAVY (calculated)
-0.891
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLLFEALM QLPPSTRDTV VKVLDHASQN HPTDHDEDYP KRICLREEEE CATGTVCVEP RLQSSDSEEY SSSRSSKTVT QEECGQCSMD DDDDETTSPS
101: SSETVEQRMI LYKPQQEEYE EDDVVSTELT LGSSSAQPSR QQEEPSSSSP SEDDTSALLL VELCRIRPMQ LQTQTQTPHK FDSYKCDVCG KEFTSYQALG
201: GHKASHRVKL QQPLVENANA EAGGKTRPRM APSGKIHKCS ICNVEFPTGQ ALGGHKRRHY EGVLSGNKRS HDEVIAGDRS SSPNHESDVT NMSGRKQSFV
301: GDHKRSHDEV IAGDKSSPKH ESDVTKNPGR SFIRLFDLNE FPLQEFDDNN MQEVDEYESA IVANKTLQLI DLI
101: SSETVEQRMI LYKPQQEEYE EDDVVSTELT LGSSSAQPSR QQEEPSSSSP SEDDTSALLL VELCRIRPMQ LQTQTQTPHK FDSYKCDVCG KEFTSYQALG
201: GHKASHRVKL QQPLVENANA EAGGKTRPRM APSGKIHKCS ICNVEFPTGQ ALGGHKRRHY EGVLSGNKRS HDEVIAGDRS SSPNHESDVT NMSGRKQSFV
301: GDHKRSHDEV IAGDKSSPKH ESDVTKNPGR SFIRLFDLNE FPLQEFDDNN MQEVDEYESA IVANKTLQLI DLI
001: MDLKTLNQFS PLTKLTVPNH RDVQVRTDQL ITYERSKRKS SLHDDEDLIS KRRCLDFQRK IEDNECANDG VFVAPPRFKS GQVSIRQRSD APLSSQAVKH
101: DEFANDAFYK PWLDSFRLKR QRLGDDEDPS SSSSPSEVDI AALTLLQFSC DRRHPQTQTL TRPQPQTHKT QLQRPPPQLQ SQTQTAPPKS DLFKCSICEK
201: VFTSYQALGG HKASHSIKAA QLENAGADAG EKTRSKMLSP SGKIHKCDIC HVLFPTGQAL GGHKRRHYEG LLGGHKRGND EAVLKLSPNS NKSVVTKVLD
301: AEQSLRASDN IHKRNQDEVV PSRDKWSLSN VSVVKNVLDL KLSLGESDGG HKDSQDEVVV HEDKCSPSSN GSIVTNVSDP EQSVRRLIDL NNPPSLEFDQ
401: SRGGDVEEVE KEVVLALSSQ MKQPSKDVSA LIKRLEFAMQ ERKDGLLADD NVLIEMIMEL EGNISTTNGD DEDPYSEGRL IKVIEPIGLD EDDECVEIGL
501: GSCEQEPIQE RFGDDKDPSS DHGNVESIRL EEEDAVLFEP WLKSRLKSRD REQSQRQGFG EYEDCFSERR FLQEEEEECF GDDEDSFSDQ ISFLESNRLE
601: EEFEEEKEAA RFSNDNDFVE LLFQGIEQSK SKPKPKSCSY YDDDDDDDDD GDEDDDDDDD DVDPSSKDIR LEEENECENR AVIRPSLNSV APNQQRFGDD
701: EVPSSSSSLS KDETAALCPT PHSQTQPQSQ TQLQKVTQPQ TQMLPKSDSY QCNVCGRELP SYQALGGHKA SHRTKPPVEN ATGEKMRPKK LAPSGKIHKC
801: SICHREFSTG QSLGGHKRLH YEGVLRGHKR SQEKEAVSQG DKLSPSGNGS VVTHVPDPKQ SRKGLIVINK VPSPEFNDPG DKDILEGESA LLANKLEQDR
901: GITSTRMING LKFFNFL
101: DEFANDAFYK PWLDSFRLKR QRLGDDEDPS SSSSPSEVDI AALTLLQFSC DRRHPQTQTL TRPQPQTHKT QLQRPPPQLQ SQTQTAPPKS DLFKCSICEK
201: VFTSYQALGG HKASHSIKAA QLENAGADAG EKTRSKMLSP SGKIHKCDIC HVLFPTGQAL GGHKRRHYEG LLGGHKRGND EAVLKLSPNS NKSVVTKVLD
301: AEQSLRASDN IHKRNQDEVV PSRDKWSLSN VSVVKNVLDL KLSLGESDGG HKDSQDEVVV HEDKCSPSSN GSIVTNVSDP EQSVRRLIDL NNPPSLEFDQ
401: SRGGDVEEVE KEVVLALSSQ MKQPSKDVSA LIKRLEFAMQ ERKDGLLADD NVLIEMIMEL EGNISTTNGD DEDPYSEGRL IKVIEPIGLD EDDECVEIGL
501: GSCEQEPIQE RFGDDKDPSS DHGNVESIRL EEEDAVLFEP WLKSRLKSRD REQSQRQGFG EYEDCFSERR FLQEEEEECF GDDEDSFSDQ ISFLESNRLE
601: EEFEEEKEAA RFSNDNDFVE LLFQGIEQSK SKPKPKSCSY YDDDDDDDDD GDEDDDDDDD DVDPSSKDIR LEEENECENR AVIRPSLNSV APNQQRFGDD
701: EVPSSSSSLS KDETAALCPT PHSQTQPQSQ TQLQKVTQPQ TQMLPKSDSY QCNVCGRELP SYQALGGHKA SHRTKPPVEN ATGEKMRPKK LAPSGKIHKC
801: SICHREFSTG QSLGGHKRLH YEGVLRGHKR SQEKEAVSQG DKLSPSGNGS VVTHVPDPKQ SRKGLIVINK VPSPEFNDPG DKDILEGESA LLANKLEQDR
901: GITSTRMING LKFFNFL
Arabidopsis Description
C2H2 type zinc finger transcription factor family [Source:UniProtKB/TrEMBL;Acc:Q9C538]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.