Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029985.1-P | Field mustard | nucleus | 98.2 | 98.64 |
| CDX68558 | Canola | nucleus | 93.69 | 93.69 |
| CDX68559 | Canola | nucleus | 93.24 | 92.0 |
| CDY02102 | Canola | nucleus | 61.26 | 86.08 |
| AT3G49930.1 | Thale cress | nucleus | 78.83 | 81.4 |
| CDY23027 | Canola | nucleus | 60.81 | 79.41 |
| CDX81313 | Canola | nucleus | 55.86 | 66.67 |
| CDY37851 | Canola | nucleus | 62.16 | 64.19 |
| CDY43576 | Canola | nucleus | 59.91 | 63.64 |
| CDY18661 | Canola | nucleus | 58.11 | 62.32 |
| CDY08718 | Canola | nucleus | 59.46 | 54.77 |
| CDY36493 | Canola | nucleus | 57.21 | 52.7 |
| CDY30794 | Canola | nucleus | 39.19 | 46.03 |
| CDY22361 | Canola | nucleus | 38.29 | 45.95 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 45.05 | 42.92 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 38.74 | 42.16 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 40.54 | 41.1 |
| CDX90105 | Canola | nucleus | 42.34 | 40.34 |
| CDY11770 | Canola | nucleus | 42.34 | 40.34 |
| CDX84907 | Canola | nucleus | 41.44 | 40.17 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 39.64 | 40.0 |
| CDY27629 | Canola | nucleus | 40.99 | 39.74 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 39.19 | 39.73 |
| CDY03945 | Canola | nucleus | 40.99 | 39.39 |
| Os03t0610400-01 | Rice | nucleus | 40.54 | 37.82 |
| CDY51312 | Canola | nucleus | 37.39 | 37.73 |
| CDX70236 | Canola | nucleus, plastid | 37.39 | 36.4 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 39.19 | 36.4 |
| CDX95435 | Canola | nucleus | 42.79 | 36.4 |
| CDY65161 | Canola | nucleus | 43.24 | 35.82 |
| CDY42192 | Canola | nucleus | 42.34 | 35.61 |
| CDY46162 | Canola | nucleus | 42.79 | 35.58 |
| CDX99202 | Canola | nucleus | 42.34 | 35.34 |
| CDX82290 | Canola | nucleus | 42.79 | 35.32 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 37.84 | 35.29 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 38.29 | 35.27 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 38.29 | 34.41 |
| Os12t0583700-00 | Rice | nucleus | 37.39 | 33.6 |
| Zm00001d030858_P001 | Maize | nucleus | 36.04 | 28.88 |
| EES16240 | Sorghum | nucleus | 36.04 | 27.59 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 33.33 | 26.81 |
| CDX95629 | Canola | nucleus | 30.18 | 24.45 |
| CDY71582 | Canola | nucleus | 28.38 | 23.16 |
| CDY41155 | Canola | nucleus | 25.68 | 22.98 |
| CDX89061 | Canola | nucleus | 27.03 | 22.81 |
| CDY37027 | Canola | nucleus | 28.83 | 22.78 |
| CDX71799 | Canola | nucleus | 26.58 | 22.69 |
| CDY27394 | Canola | nucleus | 28.83 | 22.46 |
| CDX67836 | Canola | nucleus | 29.73 | 22.37 |
| CDX83402 | Canola | nucleus | 28.83 | 21.48 |
| CDY48363 | Canola | nucleus | 26.58 | 20.56 |
| CDY70162 | Canola | nucleus | 18.92 | 19.63 |
| CDY42873 | Canola | nucleus | 21.17 | 18.88 |
| CDY02142 | Canola | nucleus | 22.97 | 18.75 |
| CDY23066 | Canola | plastid | 22.97 | 18.55 |
| CDY50966 | Canola | nucleus | 29.73 | 17.69 |
| CDY40527 | Canola | nucleus | 14.41 | 16.49 |
| CDY09671 | Canola | nucleus | 14.41 | 16.0 |
| CDY32274 | Canola | nucleus | 13.96 | 15.74 |
| CDY28108 | Canola | nucleus | 30.63 | 15.08 |
| CDY69391 | Canola | nucleus | 14.41 | 14.95 |
| CDY50848 | Canola | nucleus | 13.96 | 14.83 |
| CDY53641 | Canola | nucleus | 13.96 | 14.83 |
Protein Annotations
| EnsemblPlants:CDX83103 | EnsemblPlantsGene:GSBRNA2T00138612001 | GO:A0A078D796 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 | PFAM:PF13912 |
| PFscan:PS50157 | ProteinID:CDX83103 | ProteinID:CDX83103.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EEDD00 | MapMan:15.5.15 | : | : | : |
Description
BnaA01g21030D
Coordinates
chrLK031831:+:1672621..1673289
Molecular Weight (calculated)
24140.5 Da
IEP (calculated)
7.160
GRAVY (calculated)
-1.064
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MALDTLNSPN STTTAPSPFL TEPENLEPWT KRKRTKRHRI DDKSNPPSEE EYLALCLLML ARGSSDDDHH SSPPPPPPSD HHHRDYKCSV CGKSFPSYQA
101: LGGHKTSHRK PVSNNNYNHD DNNNSGNGSI TNNGNISNGL IGQSGKTHKC SICYKSFPSG QALGGHKRCH YDGGNSNSNI NGNGSNSHGF DLNLPADQVF
201: EVSCDETLGK SQLSSEETKS PL
101: LGGHKTSHRK PVSNNNYNHD DNNNSGNGSI TNNGNISNGL IGQSGKTHKC SICYKSFPSG QALGGHKRCH YDGGNSNSNI NGNGSNSHGF DLNLPADQVF
201: EVSCDETLGK SQLSSEETKS PL
001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
Arabidopsis Description
At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.