Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024448.1-P | Field mustard | nucleus | 97.1 | 97.1 |
| CDY36493 | Canola | nucleus | 92.95 | 92.95 |
| CDX81313 | Canola | nucleus | 67.63 | 87.63 |
| CDY18661 | Canola | nucleus | 73.03 | 85.02 |
| CDY43576 | Canola | nucleus | 73.03 | 84.21 |
| CDY37851 | Canola | nucleus | 74.27 | 83.26 |
| AT5G67450.1 | Thale cress | nucleus | 80.5 | 79.18 |
| CDY02102 | Canola | nucleus | 45.23 | 68.99 |
| CDY23027 | Canola | nucleus | 44.81 | 63.53 |
| CDX68558 | Canola | nucleus | 55.19 | 59.91 |
| CDX83103 | Canola | nucleus | 54.77 | 59.46 |
| CDX68559 | Canola | nucleus | 55.19 | 59.11 |
| CDY22361 | Canola | nucleus | 34.85 | 45.41 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 43.15 | 44.64 |
| CDY30794 | Canola | nucleus | 34.85 | 44.44 |
| CDX90105 | Canola | nucleus | 37.76 | 39.06 |
| CDX84907 | Canola | nucleus | 36.93 | 38.86 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 32.78 | 38.73 |
| CDY11770 | Canola | nucleus | 37.34 | 38.63 |
| CDY03945 | Canola | nucleus | 36.93 | 38.53 |
| CDY27629 | Canola | nucleus | 36.51 | 38.43 |
| CDX70236 | Canola | nucleus, plastid | 35.68 | 37.72 |
| CDY51312 | Canola | nucleus | 34.02 | 37.27 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 33.61 | 36.82 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 33.2 | 36.53 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 33.2 | 36.53 |
| CDY65161 | Canola | nucleus | 39.83 | 35.82 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 35.27 | 35.56 |
| CDX82290 | Canola | nucleus | 39.42 | 35.32 |
| CDX99202 | Canola | nucleus | 38.59 | 34.96 |
| CDX95435 | Canola | nucleus | 37.76 | 34.87 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 34.85 | 34.85 |
| CDY42192 | Canola | nucleus | 38.17 | 34.85 |
| Os03t0610400-01 | Rice | nucleus | 34.02 | 34.45 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 34.02 | 34.45 |
| CDY46162 | Canola | nucleus | 37.76 | 34.08 |
| Os12t0583700-00 | Rice | nucleus | 31.95 | 31.17 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 31.54 | 30.77 |
| Zm00001d030858_P001 | Maize | nucleus | 31.54 | 27.44 |
| EES16240 | Sorghum | nucleus | 32.78 | 27.24 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 29.05 | 25.36 |
| CDX95629 | Canola | nucleus | 26.56 | 23.36 |
| CDX89061 | Canola | nucleus | 25.31 | 23.19 |
| CDY37027 | Canola | nucleus | 26.97 | 23.13 |
| CDY41155 | Canola | nucleus | 22.82 | 22.18 |
| CDY27394 | Canola | nucleus | 26.14 | 22.11 |
| CDY71582 | Canola | nucleus | 24.48 | 21.69 |
| CDX71799 | Canola | nucleus | 22.82 | 21.15 |
| CDX83402 | Canola | nucleus | 26.14 | 21.14 |
| CDX67836 | Canola | nucleus | 25.73 | 21.02 |
| CDY48363 | Canola | nucleus | 24.07 | 20.21 |
| CDY70162 | Canola | nucleus | 17.43 | 19.63 |
| CDY50966 | Canola | nucleus | 29.88 | 19.3 |
| CDY42873 | Canola | nucleus | 19.5 | 18.88 |
| CDY02142 | Canola | nucleus | 20.75 | 18.38 |
| CDY23066 | Canola | plastid | 20.75 | 18.18 |
| CDY40527 | Canola | nucleus | 12.86 | 15.98 |
| CDY28108 | Canola | nucleus | 29.46 | 15.74 |
| CDY32274 | Canola | nucleus | 12.45 | 15.23 |
| CDY09671 | Canola | nucleus | 12.45 | 15.0 |
| CDY53641 | Canola | nucleus | 12.86 | 14.83 |
| CDY50848 | Canola | nucleus | 12.86 | 14.83 |
| CDY69391 | Canola | nucleus | 12.86 | 14.49 |
Protein Annotations
| EnsemblPlants:CDY08718 | EnsemblPlantsGene:GSBRNA2T00000642001 | GO:A0A078FAA3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 | PFAM:PF13912 |
| PFscan:PS50157 | ProteinID:CDY08718 | ProteinID:CDY08718.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EE041F | UniProt:A0A078FAA3 | MapMan:15.5.15 | : | : |
Description
BnaA06g25060DBnaA06g25060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAA3]
Coordinates
chrLK031989:-:23755..24815
Molecular Weight (calculated)
25981.0 Da
IEP (calculated)
8.159
GRAVY (calculated)
-0.851
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MALETLNSPT SATATARPLL RYREEMEPDN LEQWAKRKRT KRQRLDQNHH NQETTPSEEE YLALCLLMLA RGTAVQPPPT PPPPSRRLSS DHRDFKCTVC
101: GKSFNSYQAL GGHKTSHRKP PANNANVPSG QEPSNNKSHS NGGSVIFNGN GTVSNGVNQS GKIHTCSICF KSFSSGQALG GHKRCHYDGG NNGNGNGSVE
201: VMGGSDVSDV DDERSSEQSA IGGHRGFDLN LPADQVSVVI S
101: GKSFNSYQAL GGHKTSHRKP PANNANVPSG QEPSNNKSHS NGGSVIFNGN GTVSNGVNQS GKIHTCSICF KSFSSGQALG GHKRCHYDGG NNGNGNGSVE
201: VMGGSDVSDV DDERSSEQSA IGGHRGFDLN LPADQVSVVI S
001: MALETLNSPT ATTTARPLLR YREEMEPENL EQWAKRKRTK RQRFDHGHQN QETNKNLPSE EEYLALCLLM LARGSAVQSP PLPPLPSRAS PSDHRDYKCT
101: VCGKSFSSYQ ALGGHKTSHR KPTNTSITSG NQELSNNSHS NSGSVVINVT VNTGNGVSQS GKIHTCSICF KSFASGQALG GHKRCHYDGG NNGNGNGSSS
201: NSVELVAGSD VSDVDNERWS EESAIGGHRG FDLNLPADQV SVTTS
101: VCGKSFSSYQ ALGGHKTSHR KPTNTSITSG NQELSNNSHS NSGSVVINVT VNTGNGVSQS GKIHTCSICF KSFASGQALG GHKRCHYDGG NNGNGNGSSS
201: NSVELVAGSD VSDVDNERWS EESAIGGHRG FDLNLPADQV SVTTS
Arabidopsis Description
AZF1ZF1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTI6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.