CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50966	Canola	nucleus	74.72	90.35
CDY22361	Canola	nucleus	15.96	38.92
CDY30794	Canola	nucleus	15.52	37.04
CDY02102	Canola	nucleus	12.64	36.08
CDX81313	Canola	nucleus	14.41	34.95
CDX84907	Canola	nucleus	17.52	34.5
CDX90105	Canola	nucleus	17.74	34.33
CDY03945	Canola	nucleus	17.52	34.2
CDY27629	Canola	nucleus	17.29	34.06
CDX70236	Canola	nucleus, plastid	17.07	33.77
CDY23027	Canola	nucleus	12.64	33.53
CDY11770	Canola	nucleus	17.29	33.48
CDX82290	Canola	nucleus	19.29	32.34
CDY51312	Canola	nucleus	15.74	32.27
CDY18661	Canola	nucleus	14.63	31.88
CDX95435	Canola	nucleus	18.4	31.8
CDY43576	Canola	nucleus	14.63	31.58
CDY42192	Canola	nucleus	18.4	31.44
CDY65161	Canola	nucleus	18.63	31.34
CDX99202	Canola	nucleus	18.4	31.2
CDY37851	Canola	nucleus	14.86	31.16
CDY46162	Canola	nucleus	18.4	31.09
CDX83103	Canola	nucleus	15.08	30.63
CDX68558	Canola	nucleus	14.86	30.18
CDX68559	Canola	nucleus	14.86	29.78
CDY08718	Canola	nucleus	15.74	29.46
CDY36493	Canola	nucleus	15.52	29.05
CDY41155	Canola	nucleus	13.53	24.6
CDX71799	Canola	nucleus	13.97	24.23
CDY37027	Canola	nucleus	14.86	23.84
CDX89061	Canola	nucleus	13.75	23.57
CDX95629	Canola	nucleus	13.75	22.63
CDY27394	Canola	nucleus	14.19	22.46
CDX83402	Canola	nucleus	14.19	21.48
CDY71582	Canola	nucleus	12.86	21.32
AT1G49900.1	Thale cress	nucleus	42.79	21.05
CDX67836	Canola	nucleus	13.53	20.68
CDY48363	Canola	nucleus	12.86	20.21
CDY70162	Canola	nucleus	9.31	19.63
CDY02142	Canola	nucleus	10.64	17.65
CDY23066	Canola	plastid	10.64	17.45
CDY42873	Canola	nucleus	9.31	16.87
CDY09671	Canola	nucleus	6.87	15.5
CDY50848	Canola	nucleus	7.1	15.31
CDY53641	Canola	nucleus	7.1	15.31
CDY69391	Canola	nucleus	7.1	14.95
CDY40527	Canola	nucleus	6.21	14.43
CDY32274	Canola	nucleus	6.21	14.21

Protein Annotations

EnsemblPlants:CDY28108	EnsemblPlantsGene:GSBRNA2T00039071001	Gene3D:3.30.160.60	GO:A0A078GTZ4	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF263
PFAM:PF13912	PFscan:PS50157	ProteinID:CDY28108	ProteinID:CDY28108.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0004EEEE1E	UniProt:A0A078GTZ4	MapMan:15.5.15	:

Description

BnaC06g02890DBnaC06g02890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTZ4]

Coordinates

chrLK032214:-:244560..246653

Molecular Weight (calculated)

49877.0 Da

IEP (calculated)

4.768

GRAVY (calculated)

-0.956

Length

451 amino acids

Sequence
(BLAST)

001: MDLLLFEALM QLPPSTRATV VKVLDHASQN HPTDHDEDSQ KRRCLQREEE EEEECATGTV CVEPRLESSD QSIDDEYSSS RSSKTVTQEE CEECSRDDDD
101: ETTSPSSSET VEQRMILFKP QQEEYEDDVV STELTLGSSS AKPSRQQEEP SCSSPSEDDT SALLLVELCR IRPMQLQTQT QTPQKFDSYK CDVCGKEFTS
201: YQALGGHKAS HRVKLQQPLV DNANAEAGGQ TRPRMAPSGK IHKCSICHVV FPTGQALGGH KRRHYEGVLS GNKRSHDEVI AGDKSSPNHE SVETKTSSGP
301: MQSIVGDHKR SHDEVIAGDK SSPNHESDVT NMSGRKQSFV GDHKRSHDEV IAGDKSSPNH ESDVTKNPGR SFVGLFDLNE PPLQEFDDNN RQEVDKFESA
401: FVANKTSSSK TIGQNESVPL PGEPHHDSEF NIVVDELGEG ALVRARHNPP P

Best Arabidopsis Sequence Match ( AT1G49900.1 )
(BLAST)

001: MDLKTLNQFS PLTKLTVPNH RDVQVRTDQL ITYERSKRKS SLHDDEDLIS KRRCLDFQRK IEDNECANDG VFVAPPRFKS GQVSIRQRSD APLSSQAVKH
101: DEFANDAFYK PWLDSFRLKR QRLGDDEDPS SSSSPSEVDI AALTLLQFSC DRRHPQTQTL TRPQPQTHKT QLQRPPPQLQ SQTQTAPPKS DLFKCSICEK
201: VFTSYQALGG HKASHSIKAA QLENAGADAG EKTRSKMLSP SGKIHKCDIC HVLFPTGQAL GGHKRRHYEG LLGGHKRGND EAVLKLSPNS NKSVVTKVLD
301: AEQSLRASDN IHKRNQDEVV PSRDKWSLSN VSVVKNVLDL KLSLGESDGG HKDSQDEVVV HEDKCSPSSN GSIVTNVSDP EQSVRRLIDL NNPPSLEFDQ
401: SRGGDVEEVE KEVVLALSSQ MKQPSKDVSA LIKRLEFAMQ ERKDGLLADD NVLIEMIMEL EGNISTTNGD DEDPYSEGRL IKVIEPIGLD EDDECVEIGL
501: GSCEQEPIQE RFGDDKDPSS DHGNVESIRL EEEDAVLFEP WLKSRLKSRD REQSQRQGFG EYEDCFSERR FLQEEEEECF GDDEDSFSDQ ISFLESNRLE
601: EEFEEEKEAA RFSNDNDFVE LLFQGIEQSK SKPKPKSCSY YDDDDDDDDD GDEDDDDDDD DVDPSSKDIR LEEENECENR AVIRPSLNSV APNQQRFGDD
701: EVPSSSSSLS KDETAALCPT PHSQTQPQSQ TQLQKVTQPQ TQMLPKSDSY QCNVCGRELP SYQALGGHKA SHRTKPPVEN ATGEKMRPKK LAPSGKIHKC
801: SICHREFSTG QSLGGHKRLH YEGVLRGHKR SQEKEAVSQG DKLSPSGNGS VVTHVPDPKQ SRKGLIVINK VPSPEFNDPG DKDILEGESA LLANKLEQDR
901: GITSTRMING LKFFNFL

Arabidopsis Description

C2H2 type zinc finger transcription factor family [Source:UniProtKB/TrEMBL;Acc:Q9C538]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.