Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024448.1-P | Field mustard | nucleus | 93.36 | 93.36 |
| CDY08718 | Canola | nucleus | 92.95 | 92.95 |
| CDX81313 | Canola | nucleus | 64.73 | 83.87 |
| CDY43576 | Canola | nucleus | 71.37 | 82.3 |
| CDY18661 | Canola | nucleus | 69.71 | 81.16 |
| CDY37851 | Canola | nucleus | 72.2 | 80.93 |
| AT5G67450.1 | Thale cress | nucleus | 77.18 | 75.92 |
| CDY02102 | Canola | nucleus | 44.4 | 67.72 |
| CDY23027 | Canola | nucleus | 43.98 | 62.35 |
| CDX68558 | Canola | nucleus | 53.53 | 58.11 |
| CDX68559 | Canola | nucleus | 53.53 | 57.33 |
| CDX83103 | Canola | nucleus | 52.7 | 57.21 |
| CDY22361 | Canola | nucleus | 34.02 | 44.32 |
| VIT_07s0129g00240.t01 | Wine grape | nucleus | 42.32 | 43.78 |
| CDY30794 | Canola | nucleus | 34.02 | 43.39 |
| TraesCS4A01G236000.1 | Wheat | nucleus | 32.78 | 38.73 |
| CDX90105 | Canola | nucleus | 36.93 | 38.2 |
| CDX84907 | Canola | nucleus | 36.1 | 37.99 |
| CDY11770 | Canola | nucleus | 36.51 | 37.77 |
| CDY03945 | Canola | nucleus | 36.1 | 37.66 |
| CDY27629 | Canola | nucleus | 35.68 | 37.55 |
| CDX70236 | Canola | nucleus, plastid | 34.85 | 36.84 |
| TraesCS4B01G079000.1 | Wheat | nucleus | 33.61 | 36.82 |
| HORVU4Hr1G013460.1 | Barley | nucleus | 33.2 | 36.53 |
| CDY51312 | Canola | nucleus | 33.2 | 36.36 |
| TraesCS4D01G077900.1 | Wheat | nucleus | 32.78 | 36.07 |
| CDY65161 | Canola | nucleus | 39.0 | 35.07 |
| TraesCS5B01G076400.1 | Wheat | nucleus | 34.44 | 34.73 |
| CDX99202 | Canola | nucleus | 38.17 | 34.59 |
| CDX82290 | Canola | nucleus | 38.59 | 34.57 |
| CDX95435 | Canola | nucleus | 36.93 | 34.1 |
| CDY42192 | Canola | nucleus | 37.34 | 34.09 |
| Os03t0610400-01 | Rice | nucleus | 33.61 | 34.03 |
| TraesCS5A01G070600.1 | Wheat | nucleus | 34.02 | 34.02 |
| CDY46162 | Canola | nucleus | 37.34 | 33.71 |
| TraesCS5D01G082700.1 | Wheat | nucleus | 33.2 | 33.61 |
| Os12t0583700-00 | Rice | nucleus | 31.95 | 31.17 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 31.12 | 30.36 |
| Zm00001d030858_P001 | Maize | nucleus | 31.54 | 27.44 |
| EES16240 | Sorghum | nucleus | 32.78 | 27.24 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 28.22 | 24.64 |
| CDY37027 | Canola | nucleus | 27.8 | 23.84 |
| CDX95629 | Canola | nucleus | 26.97 | 23.72 |
| CDX89061 | Canola | nucleus | 25.31 | 23.19 |
| CDY41155 | Canola | nucleus | 23.65 | 22.98 |
| CDY27394 | Canola | nucleus | 26.97 | 22.81 |
| CDY71582 | Canola | nucleus | 24.9 | 22.06 |
| CDX71799 | Canola | nucleus | 23.65 | 21.92 |
| CDX83402 | Canola | nucleus | 26.56 | 21.48 |
| CDX67836 | Canola | nucleus | 26.14 | 21.36 |
| CDY48363 | Canola | nucleus | 24.9 | 20.91 |
| CDY70162 | Canola | nucleus | 17.43 | 19.63 |
| CDY50966 | Canola | nucleus | 29.46 | 19.03 |
| CDY42873 | Canola | nucleus | 19.5 | 18.88 |
| CDY02142 | Canola | nucleus | 20.33 | 18.01 |
| CDY23066 | Canola | plastid | 20.33 | 17.82 |
| CDY40527 | Canola | nucleus | 12.86 | 15.98 |
| CDY28108 | Canola | nucleus | 29.05 | 15.52 |
| CDY32274 | Canola | nucleus | 12.45 | 15.23 |
| CDY09671 | Canola | nucleus | 12.45 | 15.0 |
| CDY53641 | Canola | nucleus | 12.86 | 14.83 |
| CDY50848 | Canola | nucleus | 12.86 | 14.83 |
| CDY69391 | Canola | nucleus | 12.86 | 14.49 |
Protein Annotations
| EnsemblPlants:CDY36493 | EnsemblPlantsGene:GSBRNA2T00062162001 | GO:A0A078HI69 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 | PFAM:PF13912 |
| PFscan:PS50157 | ProteinID:CDY36493 | ProteinID:CDY36493.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EAD493 | UniProt:A0A078HI69 | MapMan:15.5.15 | : | : |
Description
BnaC03g48520DBnaC03g48520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI69]
Coordinates
chrLK032377:-:260325..261384
Molecular Weight (calculated)
25923.9 Da
IEP (calculated)
7.647
GRAVY (calculated)
-0.791
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MALETLNSPT SATATALPLL RYREEMEPDN LEQWAKRKRT KRQRLDQNHH NQETTPSEEE YLALCLLMLA RGTAVQPPLT PPPPSHRSRS DHRDFKCTVC
101: GKSFNSYQAL GGHKTSHRKP PANNVNVPSS QEPSNNNSHG NGGSVVFSGN GTASNGVNLS GKIHTCSICF KSFSSGQALG GHKRSHYDGG NNGNGNGSVE
201: VMGGSDVSDV DDERSSEQTA FGGHRGFDLN LPADQVSVVI A
101: GKSFNSYQAL GGHKTSHRKP PANNVNVPSS QEPSNNNSHG NGGSVVFSGN GTASNGVNLS GKIHTCSICF KSFSSGQALG GHKRSHYDGG NNGNGNGSVE
201: VMGGSDVSDV DDERSSEQTA FGGHRGFDLN LPADQVSVVI A
001: MALETLNSPT ATTTARPLLR YREEMEPENL EQWAKRKRTK RQRFDHGHQN QETNKNLPSE EEYLALCLLM LARGSAVQSP PLPPLPSRAS PSDHRDYKCT
101: VCGKSFSSYQ ALGGHKTSHR KPTNTSITSG NQELSNNSHS NSGSVVINVT VNTGNGVSQS GKIHTCSICF KSFASGQALG GHKRCHYDGG NNGNGNGSSS
201: NSVELVAGSD VSDVDNERWS EESAIGGHRG FDLNLPADQV SVTTS
101: VCGKSFSSYQ ALGGHKTSHR KPTNTSITSG NQELSNNSHS NSGSVVINVT VNTGNGVSQS GKIHTCSICF KSFASGQALG GHKRCHYDGG NNGNGNGSSS
201: NSVELVAGSD VSDVDNERWS EESAIGGHRG FDLNLPADQV SVTTS
Arabidopsis Description
AZF1ZF1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTI6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.