Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040741.1-P | Field mustard | nucleus | 97.13 | 97.13 |
| CDY53641 | Canola | nucleus | 97.13 | 97.13 |
| CDY32274 | Canola | nucleus | 79.43 | 84.26 |
| CDY69391 | Canola | nucleus | 85.65 | 83.64 |
| CDY09671 | Canola | nucleus | 79.43 | 83.0 |
| CDY40527 | Canola | nucleus | 77.03 | 82.99 |
| AT4G16610.1 | Thale cress | nucleus | 79.43 | 81.37 |
| KRH57408 | Soybean | nucleus | 44.5 | 35.09 |
| KRH04135 | Soybean | nucleus | 42.58 | 33.84 |
| VIT_00s0229g00050.t01 | Wine grape | nucleus | 46.41 | 30.03 |
| KRH28087 | Soybean | nucleus | 40.19 | 29.17 |
| GSMUA_Achr4P26920_001 | Banana | mitochondrion | 36.84 | 28.21 |
| GSMUA_Achr2P18480_001 | Banana | nucleus | 33.01 | 28.16 |
| KRH77360 | Soybean | nucleus | 39.71 | 27.85 |
| CDX89061 | Canola | nucleus | 34.45 | 27.38 |
| CDY71582 | Canola | nucleus | 35.41 | 27.21 |
| CDY37027 | Canola | nucleus | 36.36 | 27.05 |
| CDX71799 | Canola | nucleus | 33.49 | 26.92 |
| CDY27394 | Canola | nucleus | 36.36 | 26.67 |
| CDY41155 | Canola | nucleus | 31.58 | 26.61 |
| CDX67836 | Canola | nucleus | 37.32 | 26.44 |
| HORVU2Hr1G097440.1 | Barley | mitochondrion | 27.27 | 26.15 |
| PGSC0003DMT400030986 | Potato | nucleus | 37.8 | 25.9 |
| Solyc06g060740.1.1 | Tomato | nucleus | 37.8 | 25.82 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 28.23 | 25.65 |
| CDX95629 | Canola | nucleus | 33.49 | 25.55 |
| GSMUA_Achr5P15450_001 | Banana | mitochondrion | 33.49 | 25.27 |
| PGSC0003DMT400012154 | Potato | nucleus | 35.89 | 25.17 |
| CDX83402 | Canola | nucleus | 34.45 | 24.16 |
| GSMUA_Achr4P12160_001 | Banana | mitochondrion | 22.49 | 24.1 |
| HORVU2Hr1G097410.1 | Barley | nucleus | 33.49 | 23.81 |
| HORVU6Hr1G063280.1 | Barley | mitochondrion, nucleus, plastid | 35.41 | 23.64 |
| HORVU0Hr1G030680.1 | Barley | nucleus | 35.41 | 23.64 |
| TraesCS6A01G248700.1 | Wheat | nucleus | 35.41 | 23.57 |
| TraesCS6B01G276100.1 | Wheat | nucleus | 35.41 | 23.57 |
| Solyc08g078590.1.1 | Tomato | nucleus | 31.58 | 23.49 |
| TraesCS2A01G413100.1 | Wheat | nucleus | 33.01 | 23.47 |
| GSMUA_Achr5P13370_001 | Banana | mitochondrion, nucleus | 33.01 | 23.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.36 | 23.25 |
| TraesCS6D01G230800.1 | Wheat | nucleus | 34.93 | 23.17 |
| CDY48363 | Canola | nucleus | 31.58 | 23.0 |
| Zm00001d002731_P001 | Maize | nucleus | 33.49 | 22.8 |
| GSMUA_Achr1P01550_001 | Banana | nucleus | 32.06 | 22.79 |
| GSMUA_Achr1P24150_001 | Banana | mitochondrion | 28.23 | 22.18 |
| TraesCS2D01G410300.1 | Wheat | nucleus | 32.54 | 22.15 |
| TraesCS2B01G431800.1 | Wheat | nucleus | 32.54 | 22.01 |
| EES11238 | Sorghum | mitochondrion | 34.45 | 21.62 |
| OQU85696 | Sorghum | mitochondrion | 34.45 | 21.36 |
| TraesCS1A01G211800.1 | Wheat | nucleus | 33.49 | 20.96 |
| Os10t0555300-01 | Rice | mitochondrion, nucleus | 35.89 | 20.89 |
| Zm00001d047102_P001 | Maize | nucleus | 33.49 | 20.59 |
| Zm00001d017497_P001 | Maize | mitochondrion | 31.1 | 20.57 |
| Zm00001d029917_P001 | Maize | nucleus | 33.49 | 20.53 |
| TraesCS1D01G214900.1 | Wheat | nucleus | 33.01 | 20.23 |
| TraesCS1B01G225500.1 | Wheat | nucleus | 33.01 | 20.23 |
| HORVU1Hr1G054170.1 | Barley | nucleus | 33.01 | 20.12 |
| Os02t0659500-01 | Rice | mitochondrion | 32.54 | 19.94 |
| CDY02102 | Canola | nucleus | 14.83 | 19.62 |
| Zm00001d051371_P001 | Maize | mitochondrion | 31.58 | 19.47 |
| GSMUA_Achr4P05560_001 | Banana | nucleus | 21.05 | 19.13 |
| CDY22361 | Canola | nucleus | 16.27 | 18.38 |
| CDY23027 | Canola | nucleus | 14.83 | 18.24 |
| EER91950 | Sorghum | mitochondrion, plastid | 33.01 | 17.88 |
| CDY30794 | Canola | nucleus | 15.79 | 17.46 |
| CDX81313 | Canola | nucleus | 14.83 | 16.67 |
| CDY43576 | Canola | nucleus | 15.79 | 15.79 |
| CDY18661 | Canola | nucleus | 14.83 | 14.98 |
| CDY37851 | Canola | nucleus | 15.31 | 14.88 |
| CDY03945 | Canola | nucleus | 16.27 | 14.72 |
| CDX90105 | Canola | nucleus | 16.27 | 14.59 |
| CDY11770 | Canola | nucleus | 16.27 | 14.59 |
| CDY51312 | Canola | nucleus | 15.31 | 14.55 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 25.36 | 14.36 |
| CDX70236 | Canola | nucleus, plastid | 15.31 | 14.04 |
| CDX84907 | Canola | nucleus | 15.31 | 13.97 |
| CDY02142 | Canola | nucleus | 18.18 | 13.97 |
| CDX83103 | Canola | nucleus | 14.83 | 13.96 |
| CDY23066 | Canola | plastid | 18.18 | 13.82 |
| CDX68559 | Canola | nucleus | 14.83 | 13.78 |
| GSMUA_Achr7P04600_001 | Banana | nucleus | 23.45 | 13.57 |
| CDY27629 | Canola | nucleus | 14.83 | 13.54 |
| CDX68558 | Canola | nucleus | 14.35 | 13.51 |
| CDY65161 | Canola | nucleus | 17.22 | 13.43 |
| CDX82290 | Canola | nucleus | 17.22 | 13.38 |
| CDY08718 | Canola | nucleus | 14.83 | 12.86 |
| CDY36493 | Canola | nucleus | 14.83 | 12.86 |
| CDX99202 | Canola | nucleus | 16.27 | 12.78 |
| CDY46162 | Canola | nucleus | 16.27 | 12.73 |
| CDX95435 | Canola | nucleus | 15.79 | 12.64 |
| CDY42192 | Canola | nucleus | 15.79 | 12.5 |
| CDY42873 | Canola | nucleus | 13.4 | 11.24 |
| CDY70162 | Canola | nucleus | 8.61 | 8.41 |
| CDY50966 | Canola | nucleus | 14.83 | 8.31 |
| CDY28108 | Canola | nucleus | 15.31 | 7.1 |
Protein Annotations
| EnsemblPlants:CDY50848 | EnsemblPlantsGene:GSBRNA2T00097591001 | GO:A0A078IP40 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF185 | PFAM:PF13912 | PFscan:PS50157 |
| ProteinID:CDY50848 | ProteinID:CDY50848.1 | ScanProsite:PS00028 | SEG:seg | UniParc:UPI0004EF30A8 | UniProt:A0A078IP40 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC08g47940DBnaC08g47940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IP40]
Coordinates
chrLK032944:+:67778..68407
Molecular Weight (calculated)
23518.9 Da
IEP (calculated)
10.231
GRAVY (calculated)
-0.938
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKHKCKLCS KSFCNGRALG GHMKSHLVSS HTPTRKKLSD SVYSSSSSSS DGKTLVYRLR ENPRKSFRVF NPDPESSTAY NSETETEPES VDPVRKRSRA
101: EVSKKKKTKK RSKKRVFESG KKQKTSHVNS NESQEPASSV SDGSPEQDLA MCLMMLSRDT REIELKKHVL AAEETKPEKI HFPELRRCVI DLNLPPPQES
201: DIVTVVSAI
101: EVSKKKKTKK RSKKRVFESG KKQKTSHVNS NESQEPASSV SDGSPEQDLA MCLMMLSRDT REIELKKHVL AAEETKPEKI HFPELRRCVI DLNLPPPQES
201: DIVTVVSAI
001: MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSARKKLG DSVYSSSSSS SDGKALAYGL RENPRKSFRV FNPDPESSTI YNSETETEPE SGDPVKKRVR
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:O23504]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.