Factsheet for Solyc06g060740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030986	Potato	nucleus	97.71	98.03
Solyc08g078590.1.1	Tomato	nucleus	50.65	55.16
KRH28087	Soybean	nucleus	43.79	46.53
KRH57408	Soybean	nucleus	40.2	46.42
KRH04135	Soybean	nucleus	39.87	46.39
KRH77360	Soybean	nucleus	44.77	45.97
GSMUA_Achr4P26920_001	Banana	mitochondrion	37.91	42.49
VIT_00s0229g00050.t01	Wine grape	nucleus	43.79	41.49
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	30.39	40.43
GSMUA_Achr5P15450_001	Banana	mitochondrion	36.27	40.07
GSMUA_Achr2P18480_001	Banana	nucleus	32.03	40.0
CDY09671	Canola	nucleus	25.16	38.5
Bra040741.1-P	Field mustard	nucleus	25.82	37.8
CDY50848	Canola	nucleus	25.82	37.8
CDY53641	Canola	nucleus	25.82	37.8
AT4G16610.1	Thale cress	nucleus	25.16	37.75
CDY40527	Canola	nucleus	23.86	37.63
CDY32274	Canola	nucleus	24.18	37.56
Solyc01g090840.2.1	Tomato	nucleus	38.56	36.53
CDY69391	Canola	nucleus	25.16	35.98
GSMUA_Achr4P12160_001	Banana	mitochondrion	22.88	35.9
Bra012701.1-P	Field mustard	nucleus, plastid	24.84	35.51
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	33.01	34.12
GSMUA_Achr1P01550_001	Banana	nucleus	32.68	34.01
GSMUA_Achr1P24150_001	Banana	mitochondrion	28.76	33.08
HORVU6Hr1G063280.1	Barley	mitochondrion, nucleus, plastid	32.68	31.95
HORVU0Hr1G030680.1	Barley	nucleus	32.68	31.95
TraesCS6A01G248700.1	Wheat	nucleus	32.68	31.85
TraesCS6D01G230800.1	Wheat	nucleus	32.68	31.75
TraesCS1A01G211800.1	Wheat	nucleus	34.64	31.74
TraesCS6B01G276100.1	Wheat	nucleus	32.35	31.53
TraesCS2A01G413100.1	Wheat	nucleus	30.07	31.29
Zm00001d002731_P001	Maize	nucleus	31.37	31.27
TraesCS1B01G225500.1	Wheat	nucleus	34.64	31.09
HORVU2Hr1G097410.1	Barley	nucleus	29.74	30.95
TraesCS1D01G214900.1	Wheat	nucleus	34.31	30.79
HORVU1Hr1G054170.1	Barley	nucleus	34.31	30.61
Os10t0555300-01	Rice	mitochondrion, nucleus	35.62	30.36
Zm00001d047102_P001	Maize	nucleus	33.66	30.29
HORVU2Hr1G097440.1	Barley	mitochondrion	21.24	29.82
TraesCS2B01G431800.1	Wheat	nucleus	30.07	29.77
TraesCS2D01G410300.1	Wheat	nucleus	29.74	29.64
Zm00001d029917_P001	Maize	nucleus	33.01	29.62
GSMUA_Achr4P05560_001	Banana	nucleus	22.22	29.57
EES11238	Sorghum	mitochondrion	32.03	29.43
OQU85696	Sorghum	mitochondrion	32.35	29.38
Os02t0659500-01	Rice	mitochondrion	32.35	29.03
Zm00001d051371_P001	Maize	mitochondrion	30.72	27.73
Solyc12g088390.1.1	Tomato	nucleus	17.97	27.5
Zm00001d017497_P001	Maize	mitochondrion	28.1	27.22
EER91950	Sorghum	mitochondrion, plastid	33.99	26.94
GSMUA_AchrUn_...	Banana	nucleus	17.97	24.12
GSMUA_AchrUn_...	Banana	mitochondrion	29.09	24.12
Solyc04g077980.1.1	Tomato	nucleus, plastid	20.26	23.85
Bra038491.1-P	Field mustard	nucleus	24.51	19.28
Solyc01g107170.2.1	Tomato	nucleus	18.63	18.39
GSMUA_Achr7P04600_001	Banana	nucleus	18.3	15.51

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:IPR013087	UniProt:K4C6Q4	PFAM:PF13912
ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR26374	PANTHER:PTHR26374:SF185	SMART:SM00355	SUPFAM:SSF57667
EnsemblPlantsGene:Solyc06g060740.1	EnsemblPlants:Solyc06g060740.1.1	UniParc:UPI0002766386	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg

Description

No Description!

Coordinates

chr6:+:38770027..38770947

Molecular Weight (calculated)

34227.2 Da

IEP (calculated)

8.094

GRAVY (calculated)

-0.947

Length

306 amino acids

Sequence
(BLAST)

001: MSMEKHKCKL CSRIFTSGKA MGGHMRSHLR TLPLPPKTPP QKQDSGGGGG RSESTLSLYS LKEEEDGEEI GEEKHLGYGL RENPKKSSRI VDPEFLDAGS
101: VVHDRDQSET ESTKKPTRRR SKRTRRMFVS DEAAVDDHPE VKKEKSAEFE PVSSFSDTSP EEDIAVCLMM LSKDVWRNSK FRDQNSKEKY QCEICNKVLK
201: SSQALGSHKT IHKKNNSEEQ NQGKSRELRL KNVDEKLHEC PFCGKIFGSG QALGGHKRTH ILSSSITASS SSKVGDSLMD SSSAKFPFGF IDLNMPAPME
301: DEDFSH

Best Arabidopsis Sequence Match ( AT3G60580.1 )
(BLAST)

001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ

Arabidopsis Description

ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.