Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P04600_001 | Banana | nucleus | 63.16 | 39.89 |
| GSMUA_Achr1P24150_001 | Banana | mitochondrion | 44.3 | 37.97 |
| GSMUA_Achr4P12160_001 | Banana | mitochondrion | 25.44 | 29.74 |
| CDY40527 | Canola | nucleus | 22.81 | 26.8 |
| CDY32274 | Canola | nucleus | 22.37 | 25.89 |
| CDY09671 | Canola | nucleus | 22.37 | 25.5 |
| Bra040741.1-P | Field mustard | nucleus | 23.25 | 25.36 |
| CDY50848 | Canola | nucleus | 23.25 | 25.36 |
| CDY53641 | Canola | nucleus | 23.25 | 25.36 |
| AT4G16610.1 | Thale cress | nucleus | 22.37 | 25.0 |
| KRH28087 | Soybean | nucleus | 31.14 | 24.65 |
| CDY69391 | Canola | nucleus | 22.81 | 24.3 |
| KRH57408 | Soybean | nucleus | 28.07 | 24.15 |
| HORVU2Hr1G097440.1 | Barley | mitochondrion | 22.81 | 23.85 |
| Bra012701.1-P | Field mustard | nucleus, plastid | 22.37 | 23.83 |
| GSMUA_Achr5P15450_001 | Banana | mitochondrion | 28.95 | 23.83 |
| KRH77360 | Soybean | nucleus | 30.7 | 23.49 |
| GSMUA_Achr4P26920_001 | Banana | mitochondrion | 28.07 | 23.44 |
| KRH04135 | Soybean | nucleus | 26.75 | 23.19 |
| GSMUA_Achr4P05560_001 | Banana | nucleus | 22.81 | 22.61 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 35.09 | 21.68 |
| GSMUA_Achr1P01550_001 | Banana | nucleus | 27.63 | 21.43 |
| GSMUA_Achr5P13370_001 | Banana | mitochondrion, nucleus | 27.63 | 21.28 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 20.61 | 20.43 |
| GSMUA_Achr2P18480_001 | Banana | nucleus | 21.49 | 20.0 |
| VIT_00s0229g00050.t01 | Wine grape | nucleus | 28.07 | 19.81 |
| TraesCS2A01G413100.1 | Wheat | nucleus | 25.44 | 19.73 |
| HORVU2Hr1G097410.1 | Barley | nucleus | 25.44 | 19.73 |
| TraesCS6B01G276100.1 | Wheat | nucleus | 26.32 | 19.11 |
| TraesCS2B01G431800.1 | Wheat | nucleus | 25.88 | 19.09 |
| HORVU6Hr1G063280.1 | Barley | mitochondrion, nucleus, plastid | 25.44 | 18.53 |
| HORVU0Hr1G030680.1 | Barley | nucleus | 25.44 | 18.53 |
| TraesCS6A01G248700.1 | Wheat | nucleus | 25.44 | 18.47 |
| TraesCS6D01G230800.1 | Wheat | nucleus | 25.44 | 18.41 |
| Zm00001d017497_P001 | Maize | mitochondrion | 25.44 | 18.35 |
| TraesCS2D01G410300.1 | Wheat | nucleus | 24.56 | 18.24 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 21.49 | 18.08 |
| PGSC0003DMT400030986 | Potato | nucleus | 24.12 | 18.03 |
| Solyc06g060740.1.1 | Tomato | nucleus | 24.12 | 17.97 |
| Zm00001d002731_P001 | Maize | nucleus | 24.12 | 17.92 |
| Os02t0659500-01 | Rice | mitochondrion | 25.88 | 17.3 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 18.86 | 16.67 |
| Solyc08g078590.1.1 | Tomato | nucleus | 20.18 | 16.37 |
| KRH39952 | Soybean | nucleus | 21.93 | 16.34 |
| EES11238 | Sorghum | mitochondrion | 23.68 | 16.22 |
| PGSC0003DMT400012154 | Potato | nucleus | 21.05 | 16.11 |
| OQU85696 | Sorghum | mitochondrion | 23.68 | 16.02 |
| Zm00001d051371_P001 | Maize | mitochondrion | 23.25 | 15.63 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 18.86 | 15.58 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 21.49 | 14.98 |
| Bra038491.1-P | Field mustard | nucleus | 22.37 | 13.11 |
| GSMUA_Achr9P26580_001 | Banana | nucleus | 7.46 | 8.13 |
| GSMUA_Achr4P28230_001 | Banana | nucleus | 7.46 | 7.94 |
| GSMUA_Achr2P13410_001 | Banana | nucleus | 7.89 | 7.41 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 8.77 | 7.25 |
| GSMUA_Achr5P01720_001 | Banana | nucleus | 7.02 | 7.02 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 7.02 | 6.48 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP04160_001 | EnsemblPlants:GSMUA_AchrUn_randomT04160_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG04160_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF185 | PFAM:PF13912 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000296157B | UniProt:M0U678 |
| MapMan:35.2 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04160_001]
Coordinates
chrchrUn_random:+:17876336..17877272
Molecular Weight (calculated)
25277.9 Da
IEP (calculated)
12.222
GRAVY (calculated)
-0.993
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MERHRCKLCH RRFSNGRALG GHMRSHVAPA PRPMKAQQHL PSPCASSSSF PAADEDSVAP ATTYGLREKS RRRSGLVDPD DTESSFRRRL TRPRRREDPS
101: ADAEPLSSVS DASPDEDVAR CLMLLSRDAW RRSRRPPLDR GGRGRGTSAV RARNTSDRIK LSAATARATR GYSSAHTATG SSPPARLSAG TKDPIFPPPP
201: LLALRRSRSR CRRRRHRRTI PSRSTTVS
101: ADAEPLSSVS DASPDEDVAR CLMLLSRDAW RRSRRPPLDR GGRGRGTSAV RARNTSDRIK LSAATARATR GYSSAHTATG SSPPARLSAG TKDPIFPPPP
201: LLALRRSRSR CRRRRHRRTI PSRSTTVS
001: MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQSSARKKLG DSVYSSSSSS SDGKALAYGL RENPRKSFRV FNPDPESSTI YNSETETEPE SGDPVKKRVR
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI
101: GDVSKKKKKK AKSKRVFENS KKQKTIHESP EPASSVSDGS PEQDLAMCLM MLSRDSRELE IKLKKPEEER KPEKRHFPEL RRCMIDLNLP PPQEAEAVTV
201: VSAI
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:O23504]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.