Factsheet for GSMUA_Achr5P01720_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P28230_001	Banana	nucleus	63.6	67.76
GSMUA_Achr2P13410_001	Banana	nucleus	71.05	66.67
GSMUA_Achr9P26580_001	Banana	nucleus	53.51	58.37
GSMUA_Achr5P08730_001	Banana	nucleus	43.86	40.49
GSMUA_Achr6P24730_001	Banana	nucleus	35.96	29.71
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	26.32	26.09
GSMUA_Achr4P12160_001	Banana	mitochondrion	19.3	22.56
GSMUA_Achr4P26920_001	Banana	mitochondrion	26.75	22.34
GSMUA_Achr5P15450_001	Banana	mitochondrion	26.32	21.66
GSMUA_Achr2P18480_001	Banana	nucleus	21.93	20.41
GSMUA_Achr4P03310_001	Banana	nucleus	22.81	20.16
GSMUA_Achr4P05560_001	Banana	nucleus	20.18	20.0
GSMUA_Achr1P01550_001	Banana	nucleus	25.44	19.73
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	25.44	19.59
GSMUA_Achr9P09370_001	Banana	nucleus	20.61	17.03
GSMUA_Achr6P34890_001	Banana	nucleus, plastid	19.3	16.24
GSMUA_AchrUn_...	Banana	mitochondrion	25.0	15.45
GSMUA_Achr4P32760_001	Banana	nucleus	21.93	15.29
GSMUA_Achr1P24150_001	Banana	mitochondrion	17.54	15.04
GSMUA_AchrUn_...	Banana	nucleus	7.02	7.02
GSMUA_Achr7P04600_001	Banana	nucleus	8.77	5.54

Protein Annotations

EnsemblPlants:GSMUA_Achr5P01720_001	EnsemblPlants:GSMUA_Achr5T01720_001	EnsemblPlantsGene:GSMUA_Achr5G01720_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF263
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000295C497	UniProt:M0SUV1	MapMan:15.5.15	:	:	:

Description

Putative Zinc finger protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01720_001]

Coordinates

chr5:-:1015361..1016047

Molecular Weight (calculated)

24205.5 Da

IEP (calculated)

7.894

GRAVY (calculated)

-0.362

Length

228 amino acids

Sequence
(BLAST)

001: MAVQTLETTV STAIPLLSDE TSDEELPHIV GWAKRKRSKR FFDHPTTEEE YLALCLVMLA RGGGSGTHRL PALASDSAPP AKLEHRCSVC GKAFGSYQAL
101: GGHKSSHRKP SSGVEEASAS GSSTASAAFV GARVHRCSVC LKTFPSGQAL GGHKRCHYDG SLASGAAAAM TSSEGASSNH RAFDLNVPAS PDSEFDNVKR
201: WLATMKPEEE EEVQSPLAFK KPRLVIPA

Best Arabidopsis Sequence Match ( AT5G67450.1 )
(BLAST)

001: MALETLNSPT ATTTARPLLR YREEMEPENL EQWAKRKRTK RQRFDHGHQN QETNKNLPSE EEYLALCLLM LARGSAVQSP PLPPLPSRAS PSDHRDYKCT
101: VCGKSFSSYQ ALGGHKTSHR KPTNTSITSG NQELSNNSHS NSGSVVINVT VNTGNGVSQS GKIHTCSICF KSFASGQALG GHKRCHYDGG NNGNGNGSSS
201: NSVELVAGSD VSDVDNERWS EESAIGGHRG FDLNLPADQV SVTTS

Arabidopsis Description

AZF1ZF1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTI6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.