Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22470_001 | |
| GSMUA_Achr4P16460_001 | |
| GSMUA_Achr8P30950_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60580.1 | GSMUA_Achr1P22470_001 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | GSMUA_Achr4P16460_001 | AT4G37650.1 | 21245844 |
| AT3G60580.1 | GSMUA_Achr8P30950_001 | AT4G37650.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P09370_001 | Banana | nucleus | 55.35 | 54.35 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 51.29 | 42.51 |
| GSMUA_Achr4P12160_001 | Banana | mitochondrion | 26.94 | 37.44 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 29.52 | 34.78 |
| PGSC0003DMT400053945 | Potato | cytosol | 18.08 | 32.03 |
| GSMUA_Achr4P26920_001 | Banana | mitochondrion | 32.1 | 31.87 |
| AT1G02030.1 | Thale cress | nucleus | 30.63 | 31.09 |
| CDY41155 | Canola | nucleus | 28.41 | 31.05 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 29.15 | 30.62 |
| CDX71799 | Canola | nucleus | 29.15 | 30.38 |
| GSMUA_Achr2P18480_001 | Banana | nucleus | 26.94 | 29.8 |
| GSMUA_Achr4P05560_001 | Banana | nucleus | 24.72 | 29.13 |
| CDY71582 | Canola | nucleus | 29.15 | 29.04 |
| CDX89061 | Canola | nucleus | 27.68 | 28.52 |
| CDX95629 | Canola | nucleus | 28.78 | 28.47 |
| Bra003422.1-P | Field mustard | nucleus | 31.0 | 28.28 |
| GSMUA_Achr5P15450_001 | Banana | mitochondrion | 28.78 | 28.16 |
| CDX67836 | Canola | nucleus | 30.63 | 28.14 |
| CDY37027 | Canola | nucleus | 29.15 | 28.11 |
| Bra040325.1-P | Field mustard | nucleus | 29.15 | 28.11 |
| GSMUA_Achr5P13370_001 | Banana | mitochondrion, nucleus | 30.63 | 28.04 |
| GSMUA_Achr1P01550_001 | Banana | nucleus | 30.26 | 27.89 |
| AT3G60580.1 | Thale cress | nucleus | 29.15 | 27.43 |
| Bra007545.1-P | Field mustard | nucleus | 29.52 | 26.94 |
| CDY27394 | Canola | nucleus | 28.04 | 26.67 |
| GSMUA_Achr1P24150_001 | Banana | mitochondrion | 25.83 | 26.32 |
| CDX83402 | Canola | nucleus | 28.41 | 25.84 |
| CDY48363 | Canola | nucleus | 27.31 | 25.78 |
| VIT_15s0021g02720.t01 | Wine grape | nucleus | 33.58 | 25.35 |
| Solyc01g090840.2.1 | Tomato | nucleus | 29.89 | 25.08 |
| AT2G45120.1 | Thale cress | nucleus | 28.78 | 24.84 |
| Bra000372.1-P | Field mustard | mitochondrion, nucleus | 28.04 | 24.52 |
| Bra014483.1-P | Field mustard | nucleus | 22.88 | 24.31 |
| PGSC0003DMT400066939 | Potato | nucleus | 29.52 | 24.24 |
| KRH76140 | Soybean | nucleus | 32.47 | 24.11 |
| KRH75355 | Soybean | nucleus | 33.21 | 23.14 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 30.63 | 22.49 |
| KRH65408 | Soybean | nucleus | 32.1 | 22.42 |
| GSMUA_Achr4P28230_001 | Banana | nucleus | 17.34 | 21.96 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.08 | 21.49 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 18.45 | 20.24 |
| GSMUA_Achr5P01720_001 | Banana | nucleus | 16.24 | 19.3 |
| GSMUA_Achr9P26580_001 | Banana | nucleus | 14.39 | 18.66 |
| GSMUA_Achr2P13410_001 | Banana | nucleus | 16.61 | 18.52 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 18.45 | 18.12 |
| GSMUA_Achr7P04600_001 | Banana | nucleus | 17.71 | 13.3 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P34890_001 | EnsemblPlants:GSMUA_Achr6T34890_001 | EnsemblPlantsGene:GSMUA_Achr6G34890_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF216 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI000295E4D9 | UniProt:M0TCT2 | MapMan:15.5.15 | : | : | : |
Description
Putative ZOS4-10 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G34890_001]
Coordinates
chr6:-:33305166..33306566
Molecular Weight (calculated)
29952.4 Da
IEP (calculated)
9.016
GRAVY (calculated)
-0.749
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGDRLLPPL PLPLASSKHR CKVCRKCFPT GRSLGGHMRS HFAVAANSSS EGDERQQSSY SLRENPKKTW RLSDSGDGDG EMQCAECGNE FLSWRAFFGH
101: MRCHSEKPSE ERGEQDGPCS NVDGAINLML LSRGVRNWSR SCSETSDKNS AEFECKSCNK VFDSHQALGG HRASHKRMKG CRGHRTHANK GHRCLICSRF
201: FSSGQALGGH KRSHLVATAG SKRLWAAIRQ QPLEKPGVLD LNLPADGSED LKSWWLGGNL KHEPLLGVIS N
101: MRCHSEKPSE ERGEQDGPCS NVDGAINLML LSRGVRNWSR SCSETSDKNS AEFECKSCNK VFDSHQALGG HRASHKRMKG CRGHRTHANK GHRCLICSRF
201: FSSGQALGGH KRSHLVATAG SKRLWAAIRQ QPLEKPGVLD LNLPADGSED LKSWWLGGNL KHEPLLGVIS N
001: MNNNHSYDDR SFHIPLHPSN TSNPNPNLQF ALSSSYDHSP KKKRTKTVAS SSSSSPKSAS KPKYTKKPDP NAPKITRPCT ECGRKFWSWK ALFGHMRCHP
101: ERQWRGINPP PNYRVPTAAS SKQLNQILPN WVSFMSEEDH EVASCLLMLS NGTPSSSSIE RFECGGCKKV FGSHQALGGH RASHKNVKGC FAITNVTDDP
201: MTVSTSSGHD HQGKILTFSG HHKCNICFRV FSSGQALGGH MRCHWEKEEE PMISGALDLN VPPTIQDLST SDTSGCCLDL RLGL
101: ERQWRGINPP PNYRVPTAAS SKQLNQILPN WVSFMSEEDH EVASCLLMLS NGTPSSSSIE RFECGGCKKV FGSHQALGGH RASHKNVKGC FAITNVTDDP
201: MTVSTSSGHD HQGKILTFSG HHKCNICFRV FSSGQALGGH MRCHWEKEEE PMISGALDLN VPPTIQDLST SDTSGCCLDL RLGL
Arabidopsis Description
ZAT3DAZ2 [Source:UniProtKB/TrEMBL;Acc:A0A178UTT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.