Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P13410_001 | Banana | nucleus | 78.97 | 69.55 |
| GSMUA_Achr5P01720_001 | Banana | nucleus | 67.76 | 63.6 |
| GSMUA_Achr9P26580_001 | Banana | nucleus | 53.74 | 55.02 |
| GSMUA_Achr5P08730_001 | Banana | nucleus | 45.33 | 39.27 |
| GSMUA_Achr6P24730_001 | Banana | nucleus | 39.25 | 30.43 |
| GSMUA_Achr11P... | Banana | mitochondrion, nucleus | 26.17 | 24.35 |
| GSMUA_Achr4P12160_001 | Banana | mitochondrion | 20.56 | 22.56 |
| GSMUA_Achr5P15450_001 | Banana | mitochondrion | 28.5 | 22.02 |
| GSMUA_Achr4P26920_001 | Banana | mitochondrion | 27.1 | 21.25 |
| GSMUA_Achr2P18480_001 | Banana | nucleus | 23.36 | 20.41 |
| GSMUA_Achr5P13370_001 | Banana | mitochondrion, nucleus | 27.57 | 19.93 |
| GSMUA_Achr4P05560_001 | Banana | nucleus | 21.03 | 19.57 |
| GSMUA_Achr4P03310_001 | Banana | nucleus | 22.9 | 18.99 |
| GSMUA_Achr1P01550_001 | Banana | nucleus | 25.7 | 18.71 |
| GSMUA_Achr6P34890_001 | Banana | nucleus, plastid | 21.96 | 17.34 |
| GSMUA_Achr9P09370_001 | Banana | nucleus | 21.96 | 17.03 |
| GSMUA_Achr4P32760_001 | Banana | nucleus | 25.23 | 16.51 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 27.57 | 15.99 |
| GSMUA_Achr1P24150_001 | Banana | mitochondrion | 18.69 | 15.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 7.94 | 7.46 |
| GSMUA_Achr7P04600_001 | Banana | nucleus | 10.75 | 6.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P28230_001 | EnsemblPlants:GSMUA_Achr4T28230_001 | EnsemblPlantsGene:GSMUA_Achr4G28230_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR26374 | PANTHER:PTHR26374:SF263 |
| PFAM:PF13912 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0002951700 | UniProt:M0SST5 | MapMan:15.5.15 | : | : | : |
Description
Putative Zinc finger protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G28230_001]
Coordinates
chr4:+:26719412..26720056
Molecular Weight (calculated)
22677.9 Da
IEP (calculated)
7.771
GRAVY (calculated)
-0.400
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVETTTALI PPASTETSDE DLLHMEGWAK RKRTKRHRFS DRPPTEEESL AHCLVMLARG GPGPRLPSLA SDSTLAPPPG KLEYNCSVCG KAFGSYQALG
101: GHKTSHRKLT CAADEAAVDT SGSSTAGAGR LHQCSVCLKT FPSGQALGGH KRCHYDGTLG NRGLDLNVPS LPEFEFDGGV RRCLPATAAA AATAEEEEVQ
201: SPLAFKKPRL LIPA
101: GHKTSHRKLT CAADEAAVDT SGSSTAGAGR LHQCSVCLKT FPSGQALGGH KRCHYDGTLG NRGLDLNVPS LPEFEFDGGV RRCLPATAAA AATAEEEEVQ
201: SPLAFKKPRL LIPA
001: MALDTLNSPT STTTTTAPPP FLRCLDETEP ENLESWTKRK RTKRHRIDQP NPPPSEEEYL ALCLLMLARG SSDHHSPPSD HHSLSPLSDH QKDYKCSVCG
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
101: KSFPSYQALG GHKTSHRKPV SVDVNNSNGT VTNNGNISNG LVGQSGKTHN CSICFKSFPS GQALGGHKRC HYDGGNGNSN GDNSHKFDLN LPADQVSDET
201: IGKSQLSGEE TKSVL
Arabidopsis Description
At3g49930 [Source:UniProtKB/TrEMBL;Acc:Q9SN24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.