Factsheet for GSMUA_Achr4P32760_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22470_001
GSMUA_Achr4P16460_001
GSMUA_Achr8P30950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60580.1	GSMUA_Achr1P22470_001	AT4G37650.1	21245844
AT3G60580.1	GSMUA_Achr4P16460_001	AT4G37650.1	21245844
AT3G60580.1	GSMUA_Achr8P30950_001	AT4G37650.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34890_001	Banana	nucleus, plastid	42.51	51.29
GSMUA_Achr9P09370_001	Banana	nucleus	37.61	44.57
GSMUA_Achr4P12160_001	Banana	mitochondrion	24.77	41.54
GSMUA_Achr11P...	Banana	mitochondrion, nucleus	26.61	37.83
GSMUA_Achr4P26920_001	Banana	mitochondrion	30.89	37.0
PGSC0003DMT400053945	Potato	cytosol	17.13	36.6
GSMUA_Achr4P03310_001	Banana	nucleus	27.22	34.5
AT1G02030.1	Thale cress	nucleus	27.83	34.08
CDY41155	Canola	nucleus	25.69	33.87
CDX95629	Canola	nucleus	28.13	33.58
CDY71582	Canola	nucleus	27.22	32.72
GSMUA_Achr5P15450_001	Banana	mitochondrion	27.52	32.49
CDX71799	Canola	nucleus	25.69	32.31
GSMUA_Achr2P18480_001	Banana	nucleus	24.16	32.24
Bra040325.1-P	Field mustard	nucleus	27.52	32.03
CDY37027	Canola	nucleus	27.52	32.03
GSMUA_Achr5P13370_001	Banana	mitochondrion, nucleus	28.75	31.76
GSMUA_Achr1P01550_001	Banana	nucleus	28.13	31.29
CDX83402	Canola	nucleus	28.44	31.21
Bra003422.1-P	Field mustard	nucleus	28.13	30.98
CDX89061	Canola	nucleus	24.77	30.8
CDY27394	Canola	nucleus	26.61	30.53
CDX67836	Canola	nucleus	27.52	30.51
Bra007545.1-P	Field mustard	nucleus	27.52	30.3
Bra000372.1-P	Field mustard	mitochondrion, nucleus	28.44	30.0
CDY48363	Canola	nucleus	25.38	28.92
AT3G60580.1	Thale cress	nucleus	25.08	28.47
GSMUA_Achr1P24150_001	Banana	mitochondrion	22.94	28.2
KRH76140	Soybean	nucleus	31.19	27.95
AT2G45120.1	Thale cress	nucleus	26.61	27.71
VIT_15s0021g02720.t01	Wine grape	nucleus	29.97	27.3
Solyc01g090840.2.1	Tomato	nucleus	26.91	27.24
PGSC0003DMT400066939	Potato	nucleus	26.61	26.36
KRH65408	Soybean	nucleus	31.19	26.29
Bra014483.1-P	Field mustard	nucleus	20.49	26.27
GSMUA_Achr4P05560_001	Banana	nucleus	18.35	26.09
GSMUA_Achr4P28230_001	Banana	nucleus	16.51	25.23
KRH75355	Soybean	nucleus	29.66	24.94
GSMUA_Achr2P13410_001	Banana	nucleus	16.51	22.22
GSMUA_AchrUn_...	Banana	mitochondrion	24.77	21.95
GSMUA_Achr5P01720_001	Banana	nucleus	15.29	21.93
GSMUA_AchrUn_...	Banana	nucleus	14.98	21.49
GSMUA_Achr9P26580_001	Banana	nucleus	12.84	20.1
GSMUA_Achr5P08730_001	Banana	nucleus	14.68	19.43
GSMUA_Achr6P24730_001	Banana	nucleus	14.98	17.75
GSMUA_Achr7P04600_001	Banana	nucleus	13.46	12.19

Protein Annotations

EnsemblPlants:GSMUA_Achr4P32760_001	EnsemblPlants:GSMUA_Achr4T32760_001	EnsemblPlantsGene:GSMUA_Achr4G32760_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR26374	PANTHER:PTHR26374:SF216
PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI0002966846	UniProt:M0SU38	MapMan:15.5.15	:	:	:

Description

Putative ZOS3-10 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G32760_001]

Coordinates

chr4:-:29407237..29408628

Molecular Weight (calculated)

35547.3 Da

IEP (calculated)

8.764

GRAVY (calculated)

-0.888

Length

327 amino acids

Sequence
(BLAST)

001: MEGDRLPPPP SAVHRCKFCK KSFPCGRSLG GHMRSHGNLA IVGDGDERPQ SSYGLRENPK KTWRLSDSEL EKQSNCEVTP IAVPRRRRRT RRTPAAASCS
101: LSGSERDRED EDGAISLMML SRDVGRWGSG GSGSSESSVK NSVRNDPNSL SIAPKNDLEA VKCSSSGIDA KLETDHATEK RSRFECAACK KTFGSYQALG
201: GHRASYKRTK NCPGSRTDGS KNSTATEELV DRGEVSESSL GWSRKSKEHE CLICGKVFSS GQALGGHKRR HLQQQQPHEM SDLLDLNLPA TAADGDSNST
301: NAGSTESKSW WIGENLKHET LVGVVSN

Best Arabidopsis Sequence Match ( AT3G60580.1 )
(BLAST)

001: MESYKCRVCF KSFVNGKALG GHMRSHMSNS HEEEQRPSQL SYETESDVSS SDPKFAFTSS VLLEDGESES ESSRNVINLT RKRSKRTRKL DSFVTKKVKT
101: SQLGYKPESD QEPPHSSASD TTTEEDLAFC LMMLSRDKWK KNKSNKEVVE EIETEEESEG YNKINRATTK GRYKCETCGK VFKSYQALGG HRASHKKNRV
201: SNNKTEQRSE TEYDNVVVVA KRIHECPICL RVFASGQALG GHKRSHGVGN LSVNQQRRVH RNESVKQRMI DLNLPAPTEE DEVSVVFQ

Arabidopsis Description

ZAT9Zinc finger protein ZAT9 [Source:UniProtKB/Swiss-Prot;Acc:Q9M202]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.